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gnu: Add r-seuratdata.

* gnu/packages/cran.scm (r-seuratdata): New variable.
master
Ricardo Wurmus 2021-11-30 20:28:51 +01:00
parent 79bc812357
commit 53a16a2143
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@ -28740,6 +28740,44 @@ rapid and on-disk conversion between h5Seurat and AnnData objects, with the
goal of enhancing interoperability between Seurat and Scanpy.")
(license license:gpl3))))
(define-public r-seuratdata
(let ((commit "b59556b24d7d6728a5744c9c715dd5f7f32ed7a5")
(revision "1"))
(package
(name "r-seuratdata")
(version (git-version "0.2.1" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/satijalab/seurat-data")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "1xfdmdmgn4r0z6w4cxa98ic6xk8i6qz054r215dvqbjs1vydsbf9"))))
(properties `((upstream-name . "SeuratData")))
(build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
;; When there is no HOME directory, this package will fail to load
;; the included list of packages.
(add-after 'unpack 'set-HOME
(lambda _ (setenv "HOME" "/tmp"))))))
(propagated-inputs
`(("r-cli" ,r-cli)
("r-crayon" ,r-crayon)
("r-rappdirs" ,r-rappdirs)))
(home-page "https://github.com/satijalab/seurat-data")
(synopsis "Install and manage Seurat datasets")
(description
"Single cell RNA sequencing datasets can be large, consisting of
matrices that contain expression data for several thousand features across
several thousand cells. This package is designed to easily install, manage,
and learn about various single-cell datasets, provided Seurat objects and
distributed as independent packages.")
(license license:gpl3))))
(define-public r-phangorn
(package
(name "r-phangorn")