gnu: Add variant-tools.
* gnu/packages/bioinformatics.scm (variant-tools): New variable.master
parent
0b2c883828
commit
545e12f40d
|
@ -9158,6 +9158,46 @@ samples into a single report. It contains modules for a large number of
|
||||||
common bioinformatics tools.")
|
common bioinformatics tools.")
|
||||||
(license license:gpl3+)))
|
(license license:gpl3+)))
|
||||||
|
|
||||||
|
(define-public variant-tools
|
||||||
|
(package
|
||||||
|
(name "variant-tools")
|
||||||
|
(version "3.1.2")
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method git-fetch)
|
||||||
|
(uri (git-reference
|
||||||
|
(url "https://github.com/vatlab/varianttools.git")
|
||||||
|
;; There is no tag corresponding to version 3.1.2
|
||||||
|
(commit "813ae4a90d25b69abc8a40f4f70441fe09015249")))
|
||||||
|
(file-name (git-file-name name version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"12ibdmksj7icyqhks4xyvd61bygk4pjmxn618kp6vgk1af01y34g"))))
|
||||||
|
(build-system python-build-system)
|
||||||
|
(inputs
|
||||||
|
`(("boost" ,boost)
|
||||||
|
("c-blosc" ,c-blosc)
|
||||||
|
("gsl" ,gsl)
|
||||||
|
("hdf5" ,hdf5)
|
||||||
|
("hdf5-blosc" ,hdf5-blosc)
|
||||||
|
("python-cython" ,python-cython)
|
||||||
|
("zlib" ,zlib)))
|
||||||
|
(propagated-inputs
|
||||||
|
`(("python-numpy" ,python-numpy)
|
||||||
|
("python-pycurl" ,python-pycurl)
|
||||||
|
("python-pyzmq" ,python-pyzmq)
|
||||||
|
("python-scipy" ,python-scipy)
|
||||||
|
("python-tables" ,python-tables)))
|
||||||
|
(home-page "https://vatlab.github.io/vat-docs/")
|
||||||
|
(synopsis "Analyze genetic variants from Next-Gen sequencing studies")
|
||||||
|
(description
|
||||||
|
"Variant tools is a tool for the manipulation, annotation,
|
||||||
|
selection, simulation, and analysis of variants in the context of next-gen
|
||||||
|
sequencing analysis. Unlike some other tools used for next-gen sequencing
|
||||||
|
analysis, variant tools is project based and provides a whole set of tools to
|
||||||
|
manipulate and analyze genetic variants.")
|
||||||
|
(license license:gpl3+)))
|
||||||
|
|
||||||
(define-public r-chipseq
|
(define-public r-chipseq
|
||||||
(package
|
(package
|
||||||
(name "r-chipseq")
|
(name "r-chipseq")
|
||||||
|
|
Reference in New Issue