me
/
guix
Archived
1
0
Fork 0

gnu: Add r-acme.

* gnu/packages/bioconductor.scm (r-acme): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
master
Mădălin Ionel Patrașcu 2022-04-13 16:12:58 +02:00 committed by Ricardo Wurmus
parent 08df30f232
commit 55be5fc400
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 27 additions and 0 deletions

View File

@ -11661,6 +11661,33 @@ storing these data. Basic methods are accessing/replacing, subsetting,
printing and plotting @code{aCGH} objects.")
(license license:gpl2)))
(define-public r-acme
(package
(name "r-acme")
(version "2.50.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "ACME" version))
(sha256
(base32
"0h4bqbbqcwc938q7lysk5l35f64xz9d1bsniv2wshmlr4rr0zpcg"))))
(properties `((upstream-name . "ACME")))
(build-system r-build-system)
(propagated-inputs (list r-biobase r-biocgenerics))
(home-page "https://bioconductor.org/packages/aCGH/")
(synopsis "Calculating microarray enrichment")
(description
"This package implements @dfn{algorithms for calculating microarray
enrichment} (ACME), and it is a set of tools for analysing tiling array of
@dfn{combined chromatin immunoprecipitation with DNA microarray} (ChIP/chip),
DNAse hypersensitivity, or other experiments that result in regions of the
genome showing enrichment. It does not rely on a specific array technology
(although the array should be a tiling array), is very general (can be applied
in experiments resulting in regions of enrichment), and is very insensitive to
array noise or normalization methods. It is also very fast and can be applied
on whole-genome tiling array experiments quite easily with enough memory.")
(license license:gpl2+)))
;; This is a CRAN package, but it depends on Bioconductor packages, so we put
;; it here.
(define-public r-activedriverwgs