gnu: Add r-seraster.
* gnu/packages/bioinformatics.scm (r-seraster): New variable. Change-Id: I9f9fd24a9aa563f7c74154e613b85dee46bdcf79master
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@ -13330,6 +13330,45 @@ bound and non bound genomic regions to accurately identify transcription
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factors bound at the specific regions.")
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(license license:gpl2+)))
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(define-public r-seraster
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;; There are no tags or releases.
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(let ((commit "4fdc1ffe5d3feb65de9880329d221cf276b393a1")
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(revision "1"))
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(package
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(name "r-seraster")
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(version (git-version "0.99.0" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/JEFworks-Lab/SEraster")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0y33lk8q0h9nfzmf7slxxvw3l0djassp4l63nsjpm3p6z4pah5s4"))))
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(properties `((upstream-name . "SEraster")))
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(build-system r-build-system)
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(propagated-inputs (list r-biocparallel
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r-ggplot2
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r-matrix
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r-rearrr
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r-sf
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r-spatialexperiment
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r-summarizedexperiment))
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(home-page "https://github.com/JEFworks-Lab/SEraster")
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(synopsis
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"Rasterization framework for scalable spatial omics data analysis")
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(description
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"This package is a rasterization preprocessing framework that aggregates
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cellular information into spatial pixels to reduce resource requirements for
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spatial omics data analysis. SEraster reduces the number of points in spatial
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omics datasets for downstream analysis through a process of rasterization where
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single cells gene expression or cell-type labels are aggregated into equally
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sized pixels based on a user-defined resolution. SEraster can be incorporated
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with other packages to conduct downstream analyses for spatial omics datasets,
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such as detecting spatially variable genes.")
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(license license:gpl3))))
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(define-public emboss
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(package
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(name "emboss")
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