gnu: Add r-seraster.
* gnu/packages/bioinformatics.scm (r-seraster): New variable. Change-Id: I9f9fd24a9aa563f7c74154e613b85dee46bdcf79
This commit is contained in:
parent
fc51a747fa
commit
57769fb0b3
1 changed files with 39 additions and 0 deletions
|
@ -13330,6 +13330,45 @@ bound and non bound genomic regions to accurately identify transcription
|
||||||
factors bound at the specific regions.")
|
factors bound at the specific regions.")
|
||||||
(license license:gpl2+)))
|
(license license:gpl2+)))
|
||||||
|
|
||||||
|
(define-public r-seraster
|
||||||
|
;; There are no tags or releases.
|
||||||
|
(let ((commit "4fdc1ffe5d3feb65de9880329d221cf276b393a1")
|
||||||
|
(revision "1"))
|
||||||
|
(package
|
||||||
|
(name "r-seraster")
|
||||||
|
(version (git-version "0.99.0" revision commit))
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method git-fetch)
|
||||||
|
(uri (git-reference
|
||||||
|
(url "https://github.com/JEFworks-Lab/SEraster")
|
||||||
|
(commit commit)))
|
||||||
|
(file-name (git-file-name name version))
|
||||||
|
(sha256
|
||||||
|
(base32 "0y33lk8q0h9nfzmf7slxxvw3l0djassp4l63nsjpm3p6z4pah5s4"))))
|
||||||
|
(properties `((upstream-name . "SEraster")))
|
||||||
|
(build-system r-build-system)
|
||||||
|
(propagated-inputs (list r-biocparallel
|
||||||
|
r-ggplot2
|
||||||
|
r-matrix
|
||||||
|
r-rearrr
|
||||||
|
r-sf
|
||||||
|
r-spatialexperiment
|
||||||
|
r-summarizedexperiment))
|
||||||
|
(home-page "https://github.com/JEFworks-Lab/SEraster")
|
||||||
|
(synopsis
|
||||||
|
"Rasterization framework for scalable spatial omics data analysis")
|
||||||
|
(description
|
||||||
|
"This package is a rasterization preprocessing framework that aggregates
|
||||||
|
cellular information into spatial pixels to reduce resource requirements for
|
||||||
|
spatial omics data analysis. SEraster reduces the number of points in spatial
|
||||||
|
omics datasets for downstream analysis through a process of rasterization where
|
||||||
|
single cells gene expression or cell-type labels are aggregated into equally
|
||||||
|
sized pixels based on a user-defined resolution. SEraster can be incorporated
|
||||||
|
with other packages to conduct downstream analyses for spatial omics datasets,
|
||||||
|
such as detecting spatially variable genes.")
|
||||||
|
(license license:gpl3))))
|
||||||
|
|
||||||
(define-public emboss
|
(define-public emboss
|
||||||
(package
|
(package
|
||||||
(name "emboss")
|
(name "emboss")
|
||||||
|
|
Reference in a new issue