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gnu: Add r-seraster.

* gnu/packages/bioinformatics.scm (r-seraster): New variable.

Change-Id: I9f9fd24a9aa563f7c74154e613b85dee46bdcf79
master
Mădălin Ionel Patrașcu 2024-04-23 16:23:05 +02:00 committed by Ricardo Wurmus
parent fc51a747fa
commit 57769fb0b3
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GPG Key ID: 197A5888235FACAC
1 changed files with 39 additions and 0 deletions

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@ -13330,6 +13330,45 @@ bound and non bound genomic regions to accurately identify transcription
factors bound at the specific regions.")
(license license:gpl2+)))
(define-public r-seraster
;; There are no tags or releases.
(let ((commit "4fdc1ffe5d3feb65de9880329d221cf276b393a1")
(revision "1"))
(package
(name "r-seraster")
(version (git-version "0.99.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/JEFworks-Lab/SEraster")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0y33lk8q0h9nfzmf7slxxvw3l0djassp4l63nsjpm3p6z4pah5s4"))))
(properties `((upstream-name . "SEraster")))
(build-system r-build-system)
(propagated-inputs (list r-biocparallel
r-ggplot2
r-matrix
r-rearrr
r-sf
r-spatialexperiment
r-summarizedexperiment))
(home-page "https://github.com/JEFworks-Lab/SEraster")
(synopsis
"Rasterization framework for scalable spatial omics data analysis")
(description
"This package is a rasterization preprocessing framework that aggregates
cellular information into spatial pixels to reduce resource requirements for
spatial omics data analysis. SEraster reduces the number of points in spatial
omics datasets for downstream analysis through a process of rasterization where
single cells gene expression or cell-type labels are aggregated into equally
sized pixels based on a user-defined resolution. SEraster can be incorporated
with other packages to conduct downstream analyses for spatial omics datasets,
such as detecting spatially variable genes.")
(license license:gpl3))))
(define-public emboss
(package
(name "emboss")