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@ -15435,3 +15435,41 @@ files are loaded into a SQLite database, allowing much more complex
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manipulation of hierarchical features (e.g., genes, transcripts, and exons)
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manipulation of hierarchical features (e.g., genes, transcripts, and exons)
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than is possible with plain-text methods alone.")
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than is possible with plain-text methods alone.")
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(license license:expat))))
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(license license:expat))))
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(define-public libsbml
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(package
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(name "libsbml")
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(version "5.18.0")
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(source (origin
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(method url-fetch)
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(uri (string-append "mirror://sourceforge/sbml/libsbml/"
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version "/stable/libSBML-"
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version "-core-src.tar.gz"))
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(sha256
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(base32
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"0slkagrk3nfi2qsksv6b1brj6zhx4bj4bkib2sdycvrcd10ql2lh"))))
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(build-system cmake-build-system)
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(arguments
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`(#:test-target "test"
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#:configure-flags
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(list "-DWITH_CHECK=ON"
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(string-append "-DLIBXML_LIBRARY="
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(assoc-ref %build-inputs "libxml2")
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"/lib/libxml2.so")
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(string-append "-DLIBXML_INCLUDE_DIR="
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(assoc-ref %build-inputs "libxml2")
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"/include/libxml2"))))
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(propagated-inputs
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`(("libxml2" ,libxml2)))
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(native-inputs
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`(("check" ,check)
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("swig" ,swig)))
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(home-page "http://sbml.org/Software/libSBML")
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(synopsis "Process SBML files and data streams")
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(description "LibSBML is a library to help you read, write, manipulate,
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translate, and validate SBML files and data streams. The @dfn{Systems Biology
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Markup Language} (SBML) is an interchange format for computer models of
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biological processes. SBML is useful for models of metabolism, cell
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signaling, and more. It continues to be evolved and expanded by an
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international community.")
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(license license:lgpl2.1+)))
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