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gnu: Add python-demuxem.

* gnu/packages/bioinformatics.scm (python-demuxem): New variable.
master
Navid Afkhami 2023-02-02 17:00:23 +01:00 committed by Ricardo Wurmus
parent 89d76adf98
commit 59b102cab9
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@ -1092,6 +1092,35 @@ from high-throughput single-cell RNA sequencing (scRNA-seq) data.")
and sequence consensus.")
(license license:expat)))
(define-public python-demuxem
(package
(name "python-demuxem")
(version "0.1.7")
(source (origin
(method url-fetch)
(uri (pypi-uri "demuxEM" version))
(sha256
(base32
"1bhyxqjk44bmyd26m1smapf68wyf7252kk65i27k50dd3kswgnd6"))))
(build-system pyproject-build-system)
(propagated-inputs
(list python-docopt
python-importlib-metadata
python-numpy
python-pandas
python-pegasusio
python-scikit-learn
python-scipy
python-seaborn))
(native-inputs (list python-cython python-setuptools-scm))
(home-page "https://github.com/lilab-bcb/demuxEM")
(synopsis "Analyze cell-hashing/nucleus-hashing data")
(description
"This is a Python module for analyzing cell-hashing/nucleus-hashing data.
It is the demultiplexing module of Pegasus, which is used by Cumulus in the
demultiplexing step.")
(license license:bsd-3)))
(define-public python-hclust2
(package
(name "python-hclust2")