gnu: Add python-demuxem.
* gnu/packages/bioinformatics.scm (python-demuxem): New variable.master
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@ -1092,6 +1092,35 @@ from high-throughput single-cell RNA sequencing (scRNA-seq) data.")
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and sequence consensus.")
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(license license:expat)))
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(define-public python-demuxem
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(package
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(name "python-demuxem")
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(version "0.1.7")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "demuxEM" version))
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(sha256
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(base32
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"1bhyxqjk44bmyd26m1smapf68wyf7252kk65i27k50dd3kswgnd6"))))
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(build-system pyproject-build-system)
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(propagated-inputs
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(list python-docopt
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python-importlib-metadata
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python-numpy
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python-pandas
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python-pegasusio
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python-scikit-learn
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python-scipy
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python-seaborn))
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(native-inputs (list python-cython python-setuptools-scm))
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(home-page "https://github.com/lilab-bcb/demuxEM")
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(synopsis "Analyze cell-hashing/nucleus-hashing data")
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(description
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"This is a Python module for analyzing cell-hashing/nucleus-hashing data.
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It is the demultiplexing module of Pegasus, which is used by Cumulus in the
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demultiplexing step.")
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(license license:bsd-3)))
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(define-public python-hclust2
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(package
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(name "python-hclust2")
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