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gnu: python-bbknn: Update to 1.3.6.

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* gnu/packages/bioinformatics.scm (python-bbknn): Update to 1.3.6.
[arguments]: Disable tests until migration to python-scikit-learn.
[propgated-inputs]: Remove python-faiss, python-scanpy.
[propgated-inputs]: Add python-scipy, python-umap-learn.
This commit is contained in:
Brett Gilio 2019-12-23 17:31:06 -06:00
parent 02139b4214
commit 5bc95d2bcd
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1 changed files with 7 additions and 4 deletions
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@ -14,6 +14,7 @@
;;; Copyright © 2018, 2019 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> ;;; Copyright © 2018, 2019 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2019 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2019 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com> ;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com>
;;; Copyright © 2019 Brett Gilio <brettg@gnu.org>
;;; ;;;
;;; This file is part of GNU Guix. ;;; This file is part of GNU Guix.
;;; ;;;
@ -13289,21 +13290,23 @@ million cells.")
(define-public python-bbknn (define-public python-bbknn
(package (package
(name "python-bbknn") (name "python-bbknn")
(version "1.3.1") (version "1.3.6")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "bbknn" version)) (uri (pypi-uri "bbknn" version))
(sha256 (sha256
(base32 (base32
"1qgdganvj3lyxj84v7alm23b9vqhwpn8z0115qndpnpy90qxynwz")))) "1jbsh01f57zj4bhvjr3jh4532zznqd6nccmgrl3qi9gnhkf7c4y0"))))
(build-system python-build-system) (build-system python-build-system)
(arguments
`(#:tests? #f)) ; TODO: Enable after migration to scikit-learn.
(propagated-inputs (propagated-inputs
`(("python-annoy" ,python-annoy) `(("python-annoy" ,python-annoy)
("python-cython" ,python-cython) ("python-cython" ,python-cython)
("python-faiss" ,python-faiss)
("python-numpy" ,python-numpy) ("python-numpy" ,python-numpy)
("python-scanpy" ,python-scanpy))) ("python-scipy" ,python-scipy)
("python-umap-learn" ,python-umap-learn)))
(home-page "https://github.com/Teichlab/bbknn") (home-page "https://github.com/Teichlab/bbknn")
(synopsis "Batch balanced KNN") (synopsis "Batch balanced KNN")
(description "BBKNN is a batch effect removal tool that can be directly (description "BBKNN is a batch effect removal tool that can be directly