me
/
guix
Archived
1
0
Fork 0

gnu: Add python-pygenometracks.

* gnu/packages/bioinformatics.scm (python-pygenometracks): New variable.
master
Ricardo Wurmus 2018-09-05 16:07:28 +02:00 committed by Ricardo Wurmus
parent 1189c7f1b0
commit 5bfa7510d1
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 31 additions and 0 deletions

View File

@ -13668,3 +13668,34 @@ the visualization of multiple contact matrices along with other types of data
like genes, compartments, ChIP-seq coverage tracks (and in general any type of like genes, compartments, ChIP-seq coverage tracks (and in general any type of
genomic scores), long range contacts and the visualization of viewpoints.") genomic scores), long range contacts and the visualization of viewpoints.")
(license license:gpl3))) (license license:gpl3)))
(define-public python-pygenometracks
(package
(name "python-pygenometracks")
(version "2.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyGenomeTracks" version))
(sha256
(base32
"1fws6bqsyy9kj3qiabhkqx4wd4i775gsxnhszqd3zg7w67sc1ic5"))))
(build-system python-build-system)
(propagated-inputs
`(("python-configparser" ,python-configparser)
("python-future" ,python-future)
("python-hicexplorer" ,python-hicexplorer)
("python-intervaltree" ,python-intervaltree)
("python-matplotlib" ,python-matplotlib)
("python-numpy" ,python-numpy)
("python-pybigwig" ,python-pybigwig)))
(native-inputs
`(("python-pytest" ,python-pytest)))
(home-page "https://pygenometracks.readthedocs.io")
(synopsis "Program and library to plot beautiful genome browser tracks")
(description
"This package aims to produce high-quality genome browser tracks that
are highly customizable. Currently, it is possible to plot: bigwig, bed (many
options), bedgraph, links (represented as arcs), and Hi-C matrices.
pyGenomeTracks can make plots with or without Hi-C data.")
(license license:gpl3+)))