gnu: Add python-pygenometracks.
* gnu/packages/bioinformatics.scm (python-pygenometracks): New variable.master
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@ -13668,3 +13668,34 @@ the visualization of multiple contact matrices along with other types of data
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like genes, compartments, ChIP-seq coverage tracks (and in general any type of
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like genes, compartments, ChIP-seq coverage tracks (and in general any type of
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genomic scores), long range contacts and the visualization of viewpoints.")
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genomic scores), long range contacts and the visualization of viewpoints.")
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(license license:gpl3)))
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(license license:gpl3)))
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(define-public python-pygenometracks
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(package
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(name "python-pygenometracks")
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(version "2.0")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "pyGenomeTracks" version))
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(sha256
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(base32
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"1fws6bqsyy9kj3qiabhkqx4wd4i775gsxnhszqd3zg7w67sc1ic5"))))
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(build-system python-build-system)
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(propagated-inputs
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`(("python-configparser" ,python-configparser)
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("python-future" ,python-future)
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("python-hicexplorer" ,python-hicexplorer)
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("python-intervaltree" ,python-intervaltree)
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("python-matplotlib" ,python-matplotlib)
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("python-numpy" ,python-numpy)
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("python-pybigwig" ,python-pybigwig)))
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(native-inputs
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`(("python-pytest" ,python-pytest)))
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(home-page "https://pygenometracks.readthedocs.io")
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(synopsis "Program and library to plot beautiful genome browser tracks")
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(description
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"This package aims to produce high-quality genome browser tracks that
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are highly customizable. Currently, it is possible to plot: bigwig, bed (many
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options), bedgraph, links (represented as arcs), and Hi-C matrices.
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pyGenomeTracks can make plots with or without Hi-C data.")
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(license license:gpl3+)))
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