gnu: Add python-pyliftover.
* gnu/packages/bioinformatics.scm (python-pyliftover): New variable.master
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@ -15238,6 +15238,31 @@ database. That database maps k-mers to the lowest common ancestor (LCA) of all
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genomes known to contain a given k-mer.")
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(license license:expat)))
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(define-public python-pyliftover
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(package
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(name "python-pyliftover")
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(version "0.4")
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;; The version of pypi does not include test data.
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/konstantint/pyliftover")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1j8jp9iynv2l3jv5pr0pn0p3azlama1bqg233piglzm6bqh3m2m3"))))
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(build-system python-build-system)
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(arguments `(#:tests? #false)) ; the tests access the web
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(native-inputs
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`(("python-pytest" ,python-pytest)))
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(home-page "https://github.com/konstantint/pyliftover")
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(synopsis "Python implementation of UCSC liftOver genome coordinate conversion")
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(description
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"PyLiftover is a library for quick and easy conversion of genomic (point)
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coordinates between different assemblies.")
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(license license:expat)))
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(define-public r-signac
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(let ((commit "e0512d348adeda4a3f23a2e8f56d1fe09840e03c")
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(revision "1"))
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