gnu: Add python-pyliftover.
* gnu/packages/bioinformatics.scm (python-pyliftover): New variable.
This commit is contained in:
parent
562c3a4e12
commit
5ea5ea6066
1 changed files with 25 additions and 0 deletions
|
|
@ -15238,6 +15238,31 @@ database. That database maps k-mers to the lowest common ancestor (LCA) of all
|
||||||
genomes known to contain a given k-mer.")
|
genomes known to contain a given k-mer.")
|
||||||
(license license:expat)))
|
(license license:expat)))
|
||||||
|
|
||||||
|
(define-public python-pyliftover
|
||||||
|
(package
|
||||||
|
(name "python-pyliftover")
|
||||||
|
(version "0.4")
|
||||||
|
;; The version of pypi does not include test data.
|
||||||
|
(source (origin
|
||||||
|
(method git-fetch)
|
||||||
|
(uri (git-reference
|
||||||
|
(url "https://github.com/konstantint/pyliftover")
|
||||||
|
(commit version)))
|
||||||
|
(file-name (git-file-name name version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"1j8jp9iynv2l3jv5pr0pn0p3azlama1bqg233piglzm6bqh3m2m3"))))
|
||||||
|
(build-system python-build-system)
|
||||||
|
(arguments `(#:tests? #false)) ; the tests access the web
|
||||||
|
(native-inputs
|
||||||
|
`(("python-pytest" ,python-pytest)))
|
||||||
|
(home-page "https://github.com/konstantint/pyliftover")
|
||||||
|
(synopsis "Python implementation of UCSC liftOver genome coordinate conversion")
|
||||||
|
(description
|
||||||
|
"PyLiftover is a library for quick and easy conversion of genomic (point)
|
||||||
|
coordinates between different assemblies.")
|
||||||
|
(license license:expat)))
|
||||||
|
|
||||||
(define-public r-signac
|
(define-public r-signac
|
||||||
(let ((commit "e0512d348adeda4a3f23a2e8f56d1fe09840e03c")
|
(let ((commit "e0512d348adeda4a3f23a2e8f56d1fe09840e03c")
|
||||||
(revision "1"))
|
(revision "1"))
|
||||||
|
|
|
||||||
Reference in a new issue