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gnu: Add python-pyliftover.

* gnu/packages/bioinformatics.scm (python-pyliftover): New variable.
master
Ricardo Wurmus 2021-04-28 10:49:03 +02:00
parent 562c3a4e12
commit 5ea5ea6066
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1 changed files with 25 additions and 0 deletions

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@ -15238,6 +15238,31 @@ database. That database maps k-mers to the lowest common ancestor (LCA) of all
genomes known to contain a given k-mer.")
(license license:expat)))
(define-public python-pyliftover
(package
(name "python-pyliftover")
(version "0.4")
;; The version of pypi does not include test data.
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/konstantint/pyliftover")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"1j8jp9iynv2l3jv5pr0pn0p3azlama1bqg233piglzm6bqh3m2m3"))))
(build-system python-build-system)
(arguments `(#:tests? #false)) ; the tests access the web
(native-inputs
`(("python-pytest" ,python-pytest)))
(home-page "https://github.com/konstantint/pyliftover")
(synopsis "Python implementation of UCSC liftOver genome coordinate conversion")
(description
"PyLiftover is a library for quick and easy conversion of genomic (point)
coordinates between different assemblies.")
(license license:expat)))
(define-public r-signac
(let ((commit "e0512d348adeda4a3f23a2e8f56d1fe09840e03c")
(revision "1"))