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gnu: Add r-castor. 

* gnu/packages/cran.scm (r-castor): New variable.
Navid Afkhami 2023-01-27 16:05:17 +01:00 committed by Ricardo Wurmus
parent dbf965dd7b
commit 5ebbedea58
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1 changed files with 28 additions and 1 deletions
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29
gnu/packages/cran.scm
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@ -35,7 +35,7 @@
;;; Copyright © 2020 Aniket Patil <aniket112.patil@gmail.com>
;;; Copyright © 2021 Marcel Schilling <marcel.schilling@uni-luebeck.de>
;;; Copyright © 2021 Guillaume Le Vaillant <glv@posteo.net>
;;; Copyright © 2022 Navid Afkhami <navid.afkhami@mdc-berlin.de>
;;; Copyright © 2022, 2023 Navid Afkhami <navid.afkhami@mdc-berlin.de>
;;; Copyright © 2022 Greg Hogan <code@greghogan.com>
;;;
;;; This file is part of GNU Guix.
@ -256,6 +256,33 @@ can limit either their total size or the age of the oldest object (or both),
automatically pruning objects to maintain the constraints.")
(license license:expat)))
(define-public r-castor
(package
(name "r-castor")
(version "1.7.6")
(source (origin
(method url-fetch)
(uri (cran-uri "castor" version))
(sha256
(base32
"1qbndwmzzpkzgiah0hgid9z5f9iv2j53d515bjcci1591gx1fk36"))))
(properties `((upstream-name . "castor")))
(build-system r-build-system)
(propagated-inputs (list r-matrix r-naturalsort r-rcpp r-rspectra))
(home-page "https://cran.r-project.org/package=castor")
(synopsis "Efficient phylogenetics on large trees")
(description
"This tool supports analyses on massive phylogenies comprising up to
millions of tips. Functions include pruning, rerooting, calculation of
most-recent common ancestors, calculating distances from the tree root and
calculating pairwise distances. In addition, this tool takes care of
calculation of phylogenetic signal and mean trait depth (trait conservatism),
ancestral state reconstruction and hidden character prediction of discrete
characters, simulating and fitting models of trait evolution, fitting and
simulating diversification models, dating trees, comparing trees, and
reading/writing trees in Newick format.")
(license license:gpl2+)))
(define-public r-collections
(package
(name "r-collections")