gnu: julia: Update to 1.4.1.
* gnu/packages/julia.scm (julia): Update to 1.4.1. * gnu/packages/julia.scm (julia-llvm): Update to 8. Signed-off-by: Ludovic Courtès <ludo@gnu.org>master
nixo
Ludovic Courtès
parent
174f5076bf
commit
5ef30f2a1f
|
|
@ -53,7 +53,7 @@
|
|||
(let ((commit "35b1504507a7a4168caae3d78db54d1121b121e1")
|
||||
(revision "1"))
|
||||
;; When upgrading Julia, also upgrade this. Get the commit from
|
||||
;; https://github.com/JuliaLang/julia/blob/v1.3.1/deps/libuv.version
|
||||
;; https://github.com/JuliaLang/julia/blob/v1.4.1/deps/libuv.version
|
||||
(package
|
||||
(inherit libuv)
|
||||
(name "libuv-julia")
|
||||
|
|
@ -103,7 +103,7 @@
|
|||
"/deps/patches/" name ".patch"))
|
||||
|
||||
(define (julia-patch name sha)
|
||||
(let ((version "1.3.1"))
|
||||
(let ((version "1.4.1"))
|
||||
(origin (method url-fetch)
|
||||
(uri (julia-patch-url version name))
|
||||
(sha256 (base32 sha))
|
||||
|
|
@ -111,10 +111,10 @@
|
|||
|
||||
(define llvm-julia
|
||||
(package
|
||||
(inherit llvm-6)
|
||||
(inherit llvm-8)
|
||||
(name "llvm-julia")
|
||||
(source (origin
|
||||
(inherit (package-source llvm-6))
|
||||
(inherit (package-source llvm-8))
|
||||
;; Those patches are inside the Julia source repo.
|
||||
;; They are _not_ Julia specific (https://github.com/julialang/julia#llvm)
|
||||
;; but they are required to build Julia.
|
||||
|
|
@ -124,42 +124,50 @@
|
|||
((name hash)
|
||||
(julia-patch name hash)))
|
||||
(list
|
||||
'("llvm-6.0-D44650"
|
||||
"1336q4vqayr94wdcnlmcxh90mjdh34dzw9x2cbiqjnx9b1j8fxyb")
|
||||
'("llvm-7.0-D44650"
|
||||
"1h55kkmkiisfj6sk956if2bcj9s0v6n5czn8dxb870vp5nccj3ir")
|
||||
'("llvm-6.0-DISABLE_ABI_CHECKS"
|
||||
"014fawd1ba7yckalypfld22zgic87x9nx3cim42zrwygywd36pyg")
|
||||
'("llvm-6.0-NVPTX-addrspaces"
|
||||
"1qdi2zmrjsrj0h84zv2vyly2hjcn4f67mfy0s1q353g4v4jkscqc")
|
||||
'("llvm-6.0.0_D27296-libssp"
|
||||
"0s5hi2r1j63i8m6ig1346crx2aiv9f7rgb3mg80kw1wx5y7pdpfh")
|
||||
'("llvm-D27629-AArch64-large_model_6.0.1"
|
||||
"1qrshmlqvnasdyc158vfn3hnbigqph3lsq7acb9w8lwkpnnm2j4z")
|
||||
'("llvm-D34078-vectorize-fdiv"
|
||||
"1696hg84a0jxcnggvqsc2cdp271hf9a44p4qsd078qm1mfawkaay")
|
||||
'("llvm-D42262-jumpthreading-not-i1"
|
||||
"1c8w210gwidbnkkw8anp17dk5pnxws2fl3mb2qxh7y9wzfpixgaq")
|
||||
'("llvm-D44892-Perf-integration"
|
||||
"0r37jd0ssh2k1pndkfd5blgpg9z90im4vlzprhb0n0wwz45g4b05")
|
||||
'("llvm-D46460"
|
||||
"1miqgswdc0qvbaf4571c2xkxyp9ais06b1bcpa83sq22vr4hbsfb")
|
||||
'("llvm-D49832-SCEVPred"
|
||||
"0v5c88hgqj6dymv3j86ca5mhpqab5fbnrvjiw1nvnrnya9l4dlbn")
|
||||
'("llvm-D50010-VNCoercion-ni"
|
||||
"0iblb3q1xixwrb12jpb89h3ywmqmzdp6aqp416j4ncwakyjhhfkp")
|
||||
'("llvm-D50167-scev-umin"
|
||||
"1f2rakcnnyhr7w10k7gqg0k0491pyvx5ijplivw557f714ys3q6v")
|
||||
'("llvm-OProfile-line-num"
|
||||
"1jvbbmwyags0xfwamb13qrf3rgcz9i1r03m9lava7swag8xb78c7")
|
||||
'("llvm-PPC-addrspaces"
|
||||
"1f23nhsxh2s3jskbgs7da9nwg3s1hrkbk5aahl08x41wi3mny01p")
|
||||
'("llvm-rL323946-LSRTy"
|
||||
"10cz3vy1yw0w643z7xx021wa4kymx9fcm3bjg61s6vzdqd6d9fns")
|
||||
'("llvm-rL326967-aligned-load"
|
||||
"04jxnv32yj5x17hqhi8g2p8rhgp38gmjzr871w7z8s44pq10v9v4")
|
||||
'("llvm-rL327898"
|
||||
"15ah49gbsll23z28kpyahi5vl0fh3fkxcgd1zmxxdcl96s3x8bnq"))))))
|
||||
'("llvm8-D34078-vectorize-fdiv"
|
||||
"19spqc3xsazn1xs9gpcgv9ldadfkv49rmc5khl7sf1dlmhgi4602")
|
||||
'("llvm7-D50010-VNCoercion-ni"
|
||||
"18scg6aa036xa1508s7q93w9dvc5gp69fz6yl6fkh4yffw4gymw6")
|
||||
'("llvm-8.0-D50167-scev-umin"
|
||||
"0g9w2x8yryjdkihnrf18x0yi5bi14c5p8wffda1w732dr5ckzk94")
|
||||
'("llvm-D57118-powerpc"
|
||||
"0vxz5s0s9b625v1rv8lg1566yhxh1i91ydzmvy5s7njvzc7p19aw")
|
||||
'("llvm8-WASM-addrspaces"
|
||||
"1176agj9hh7csdm2lnklb42zcdsb3q6lx9jiyp2shn4p2678y76q")
|
||||
'("llvm-exegesis-mingw"
|
||||
"0ph1cj1j7arvf1xq2xcr7qf9g0cpdl14fincgr67vpi520zvd3vp")
|
||||
'("llvm-test-plugin-mingw"
|
||||
"12z738cnahbf6n381im7i0hxp1m6k9hrnfjlmq9sac46nxly9gnj")
|
||||
'("llvm-8.0-D66401-mingw-reloc"
|
||||
"15v3p5sznn979cfnd7gdn3nd701fd7xd5aks6lnj1mslvljlq3ls")
|
||||
'("llvm7-revert-D44485"
|
||||
"0f59kq3p3mpwsbmskypbi4zn01l6ig0x7v2rjp08k2r8z8m6fa8n")
|
||||
'("llvm-8.0-D63688-wasm-isLocal"
|
||||
"0i9wi5n63ip3802z6m7aj3p07hkqjlmp4vg4wq3xkf9f6w9rksab")
|
||||
'("llvm-8.0-D55758-tablegen-cond"
|
||||
"1l08mg7qigravi7plsq3yzya80fljnp95n8faddr29wbr2qr0655")
|
||||
'("llvm-8.0-D59389-refactor-wmma"
|
||||
"0rgrwk4xlwpk7yai2j7xadcfws93rmk2hhh44fysa88imvrbp478")
|
||||
'("llvm-8.0-D59393-mma-ptx63-fix"
|
||||
"094jcsxbcx9fljj623mgmc0rjpk12s2rs0di0ck0hakzhr8mbv5n")
|
||||
'("llvm-8.0-D66657-codegen-degenerate"
|
||||
"1n1ddx19h90bbpimdyd9dh8fsm6gb93xxyqm4ljkxa1k3cx2vm72")
|
||||
'("llvm-8.0-D71495-vectorize-freduce"
|
||||
"1zff08wvji9lnpskk4b3p5zyjsy5hhy23ynxjqlj9dw7jvvfrf0p")
|
||||
'("llvm-8.0-D75072-SCEV-add-type"
|
||||
"0amlyyndsc90ml2k6prdahf24q0j23nfmlbqf8gcqcxpl5sqq3i6")
|
||||
'("llvm-8.0-D65174-limit-merge-stores"
|
||||
"1ls5114fhgip9rbqabqc16mi367ra0k75ngc1vyqqhq1ghm9x7y9"))))))
|
||||
(arguments
|
||||
(substitute-keyword-arguments (package-arguments llvm-6)
|
||||
(substitute-keyword-arguments (package-arguments llvm-8)
|
||||
((#:configure-flags flags)
|
||||
`(list ;; Taken from NixOS. Only way I could get libLLVM-6.0.so
|
||||
"-DCMAKE_BUILD_TYPE=Release"
|
||||
|
|
@ -191,6 +199,7 @@
|
|||
(url "https://github.com/vtjnash/libwhich.git")
|
||||
;; fixes linux-vdso.so related tests
|
||||
(commit "87cffe10080c98e7b5786c5166e420bf1ada1d41")))
|
||||
(file-name (string-append name "-" version "-checkout"))
|
||||
(sha256
|
||||
(base32
|
||||
"1bpa0fcqpa3ai3hm8mz0p13bf76fsq53wsfcx5qw302zh22108xr"))))
|
||||
|
|
@ -222,7 +231,7 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
|
|||
(define-public julia
|
||||
(package
|
||||
(name "julia")
|
||||
(version "1.3.1")
|
||||
(version "1.4.1")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (string-append
|
||||
|
|
@ -230,7 +239,7 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
|
|||
version "/julia-" version ".tar.gz"))
|
||||
(sha256
|
||||
(base32
|
||||
"1nwkmr9j55g1zkxdchnid1h022s0is52vx23niksshgvh793g41x"))
|
||||
"030aza3qj5zcinxbrbqgi7p64q6klwq2bhwccraarx7l0hg9lw3i"))
|
||||
(patches
|
||||
(search-patches "julia-SOURCE_DATE_EPOCH-mtime.patch"))))
|
||||
(build-system gnu-build-system)
|
||||
|
|
@ -253,15 +262,6 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
|
|||
(delete 'configure)
|
||||
(add-after 'unpack 'prepare-deps
|
||||
(lambda* (#:key inputs #:allow-other-keys)
|
||||
(mkdir "deps/srccache")
|
||||
;; no USE_SYSTEM_{OBJCONV/LIBWHICH} option
|
||||
(copy-file (assoc-ref inputs "objconv")
|
||||
"deps/srccache/objconv.zip")
|
||||
(copy-file (assoc-ref inputs "libwhich")
|
||||
(string-append "deps/srccache/libwhich-"
|
||||
"81e9723c0273d78493dc8c8ed570f68d9ce7e89e"
|
||||
".tar.gz"))
|
||||
|
||||
;; needed by libwhich
|
||||
(setenv "LD_LIBRARY_PATH"
|
||||
(string-join (map (lambda (pkg)
|
||||
|
|
@ -286,21 +286,19 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
|
|||
(("src ui doc deps")
|
||||
"src ui deps"))
|
||||
#t))
|
||||
(add-after 'unpack 'use-system-libwhich
|
||||
(lambda* (#:key inputs #:allow-other-keys)
|
||||
;; don't build it
|
||||
(substitute* "deps/Makefile"
|
||||
(("DEP_LIBS \\+= libwhich") ""))
|
||||
;; call our version
|
||||
(substitute* "base/Makefile"
|
||||
(("\\$\\$\\(build_depsbindir\\)/libwhich")
|
||||
(string-append (assoc-ref inputs "libwhich") "/bin/libwhich")))
|
||||
#t))
|
||||
(add-before 'check 'set-home
|
||||
;; Some tests require a home directory to be set.
|
||||
(lambda _ (setenv "HOME" "/tmp") #t))
|
||||
(add-after 'unpack 'hardcode-soname-map
|
||||
;; ./src/runtime_ccall.cpp creates a map from library names to paths
|
||||
;; using the output of "/sbin/ldconfig -p". Since ldconfig is not
|
||||
;; used in Guix, we patch runtime_ccall.cpp to contain a static map.
|
||||
(lambda* (#:key inputs #:allow-other-keys)
|
||||
(substitute* "base/math.jl"
|
||||
(("const libm = Base.libm_name")
|
||||
(string-append "const libm = \""
|
||||
(assoc-ref inputs "openlibm")
|
||||
"/lib/libopenlibm.so"
|
||||
"\"")))
|
||||
#t))
|
||||
(add-before 'build 'fix-include-and-link-paths
|
||||
(lambda* (#:key inputs #:allow-other-keys)
|
||||
;; LIBUTF8PROC is a linker flag, not a build target. It is
|
||||
|
|
@ -343,10 +341,14 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
|
|||
;; running order. I think it depends on the number of
|
||||
;; runners, disabling it for now
|
||||
;; https://github.com/JuliaLang/julia/issues/34330
|
||||
"tests = filter(e->!in(e,[\"backtrace\",\"exceptions\",
|
||||
\"stress\",\"precompile\",
|
||||
\"client\",\"stacktraces\"]),
|
||||
"tests = filter(e->!in(e,[\"backtrace\",\"exceptions\",\"precompile\",
|
||||
\"client\",\"stacktraces\"]),
|
||||
testnames)"))
|
||||
;; precompile test is broken, fixed in
|
||||
;; fed29f893544d1dc8f86444c65d632c68168d0f3
|
||||
(substitute* "test/precompile.jl"
|
||||
(("@test !isdefined\\(Base.Nothing.name.mt")
|
||||
"# @test !isdefined(Base.Nothing.name.mt"))
|
||||
;; When HOME is not set, julia calls uv_os_homedir, which in
|
||||
;; turns call getpwuid_r. Add the HOME env variable to the
|
||||
;; external julia call to fix this
|
||||
|
|
@ -356,24 +358,31 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
|
|||
;; https://github.com/JuliaLang/julia/issues/32377
|
||||
(substitute* "stdlib/REPL/test/replcompletions.jl"
|
||||
(("@test count") "@test_broken count"))
|
||||
;; Dates has a similar bug:
|
||||
;; https://github.com/JuliaLang/julia/issues/34655
|
||||
(substitute* "stdlib/Dates/test/io.jl"
|
||||
(("\"Dates.Time") "\"Time"))
|
||||
;; Upstream bug I found when packaging
|
||||
;; https://github.com/JuliaLang/julia/issues/35785
|
||||
(substitute* "test/file.jl"
|
||||
(("@test dirname\\(t\\) == d") "@test_broken dirname(t) == d"))
|
||||
#t))
|
||||
(add-after 'install 'make-wrapper
|
||||
(lambda* (#:key inputs outputs #:allow-other-keys)
|
||||
(let* ((out (assoc-ref outputs "out"))
|
||||
(bin (string-append out "/bin"))
|
||||
(program "julia"))
|
||||
(with-directory-excursion bin
|
||||
(wrap-program program
|
||||
`("JULIA_LOAD_PATH" ":" prefix
|
||||
("" "$JULIA_LOAD_PATH")))
|
||||
(wrap-program program
|
||||
`("JULIA_DEPOT_PATH" ":" prefix
|
||||
("" "$JULIA_DEPOT_PATH"))))
|
||||
#t))))
|
||||
(add-after 'install 'make-wrapper
|
||||
(lambda* (#:key inputs outputs #:allow-other-keys)
|
||||
(let* ((out (assoc-ref outputs "out"))
|
||||
(bin (string-append out "/bin"))
|
||||
(program "julia"))
|
||||
(with-directory-excursion bin
|
||||
(wrap-program program
|
||||
`("JULIA_LOAD_PATH" ":" prefix
|
||||
("" "$JULIA_LOAD_PATH")))
|
||||
(wrap-program program
|
||||
`("JULIA_DEPOT_PATH" ":" prefix
|
||||
("" "$JULIA_DEPOT_PATH"))))
|
||||
#t))))
|
||||
#:make-flags
|
||||
(list
|
||||
(string-append "prefix=" (assoc-ref %outputs "out"))
|
||||
(string-append "PREFIX=" (assoc-ref %outputs "out"))
|
||||
(string-append "prefix=" (assoc-ref %outputs "out"))
|
||||
|
||||
;; Passing the MARCH flag is necessary to build binary substitutes for
|
||||
;; the supported architectures.
|
||||
|
|
@ -421,17 +430,12 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
|
|||
"USE_SYSTEM_PATCHELF=1"
|
||||
"USE_SYSTEM_PCRE=1"
|
||||
"USE_SYSTEM_OPENLIBM=1"
|
||||
|
||||
"USE_SYSTEM_MBEDTLS=1"
|
||||
"USE_SYSTEM_LIBSSH2=1"
|
||||
"USE_SYSTEM_GMP=1"
|
||||
"USE_SYSTEM_MPFR=1"
|
||||
"USE_SYSTEM_ARPACK=1"
|
||||
"USE_SYSTEM_LIBGIT2=1"
|
||||
(string-append "LIBUV="
|
||||
(assoc-ref %build-inputs "libuv")
|
||||
"/lib/libuv.so")
|
||||
(string-append "LIBUV_INC="
|
||||
(assoc-ref %build-inputs "libuv")
|
||||
"/include")
|
||||
"USE_SYSTEM_ZLIB=1")))
|
||||
(inputs
|
||||
`(("llvm" ,llvm-julia)
|
||||
|
|
@ -462,30 +466,7 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
|
|||
("suitesparse" ,suitesparse)
|
||||
;; Find dependencies versions here:
|
||||
;; https://raw.githubusercontent.com/JuliaLang/julia/v1.3.0/deps/Versions.make
|
||||
("objconv"
|
||||
,(origin
|
||||
(method url-fetch)
|
||||
;; No versioned URL, see <https://www.agner.org/optimize/> for updates.
|
||||
(uri "https://www.agner.org/optimize/objconv.zip")
|
||||
(file-name "objconv-2018-10-07.zip")
|
||||
(sha256
|
||||
(base32
|
||||
"0wp6ld9vk11f4nnkn56627zmlv9k5vafi99qa3yyn1pgcd61zcfs"))))
|
||||
("libwhich"
|
||||
,(let ((commit "81e9723c0273d78493dc8c8ed570f68d9ce7e89e"))
|
||||
(origin
|
||||
;; Note: We use a /tarball URL, but that's because Julia's build
|
||||
;; system checks the hash of that tarball; thus we can't use
|
||||
;; 'git-fetch'.
|
||||
(method url-fetch)
|
||||
(uri (string-append
|
||||
"https://api.github.com/repos/vtjnash/libwhich/tarball/"
|
||||
commit))
|
||||
(file-name (string-append "libwhich-" (string-take commit 7)
|
||||
".tar.gz"))
|
||||
(sha256
|
||||
(base32
|
||||
"1p7zg31kpmpbmh1znrk1xrbd074agx13b9q4dcw8n2zrwwdlbz3b")))))
|
||||
("libwhich" ,libwhich)
|
||||
("dsfmt" ,dsfmt)))
|
||||
(native-inputs
|
||||
`(("openssl" ,openssl)
|
||||
|
|
|
|||
Reference in New Issue