import/cran: Add input style "specification".
* guix/import/cran.scm (%input-style): New parameter. (format-inputs): Use it. * guix/scripts/import/cran.scm (guix-import-cran): Set the %input-style parameter. (%options): Add "--style" option. * doc/guix.texi (Invoking guix import): Document it.master
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@ -11009,6 +11009,13 @@ When @option{--recursive} is added, the importer will traverse the
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dependency graph of the given upstream package recursively and generate
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package expressions for all those packages that are not yet in Guix.
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When @option{--style=specification} is added, the importer will generate
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package definitions whose inputs are package specifications instead of
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references to package variables. This is useful when generated package
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definitions are to be appended to existing user modules, as the list of
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used package modules need not be changed. The default is
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@option{--style=variable}.
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When @option{--archive=bioconductor} is added, metadata is imported from
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@uref{https://www.bioconductor.org/, Bioconductor}, a repository of R
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packages for the analysis and comprehension of high-throughput
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@ -51,7 +51,9 @@
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#:use-module (guix upstream)
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#:use-module (guix packages)
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#:use-module (gnu packages)
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#:export (cran->guix-package
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#:export (%input-style
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cran->guix-package
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bioconductor->guix-package
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cran-recursive-import
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%cran-updater
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@ -74,6 +76,9 @@
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;;;
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;;; Code:
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(define %input-style
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(make-parameter 'variable)) ; or 'specification
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(define string->license
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(match-lambda
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("AGPL-3" 'agpl3+)
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@ -128,7 +133,11 @@
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(define (format-inputs names)
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"Generate a sorted list of package inputs from a list of package NAMES."
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(map (lambda (name)
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(list name (list 'unquote (string->symbol name))))
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(case (%input-style)
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((specification)
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(list name (list 'unquote (list 'specification->package name))))
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(else
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(list name (list 'unquote (string->symbol name))))))
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(sort names string-ci<?)))
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(define* (maybe-inputs package-inputs #:optional (type 'inputs))
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@ -67,6 +67,10 @@ Import and convert the CRAN package for PACKAGE-NAME.\n"))
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(lambda (opt name arg result)
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(alist-cons 'repo (string->symbol arg)
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(alist-delete 'repo result))))
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(option '(#\s "style") #t #f
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(lambda (opt name arg result)
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(alist-cons 'style (string->symbol arg)
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(alist-delete 'style result))))
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(option '(#\r "recursive") #f #f
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(lambda (opt name arg result)
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(alist-cons 'recursive #t result)))
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@ -93,23 +97,24 @@ Import and convert the CRAN package for PACKAGE-NAME.\n"))
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value)
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(_ #f))
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(reverse opts))))
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(match args
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((package-name)
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(if (assoc-ref opts 'recursive)
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;; Recursive import
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(with-error-handling
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(map package->definition
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(filter identity
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(cran-recursive-import package-name
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#:repo (or (assoc-ref opts 'repo) 'cran)))))
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;; Single import
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(let ((sexp (cran->guix-package package-name
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#:repo (or (assoc-ref opts 'repo) 'cran))))
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(unless sexp
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(leave (G_ "failed to download description for package '~a'~%")
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package-name))
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sexp)))
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(()
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(leave (G_ "too few arguments~%")))
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((many ...)
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(leave (G_ "too many arguments~%"))))))
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(parameterize ((%input-style (assoc-ref opts 'style)))
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(match args
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((package-name)
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(if (assoc-ref opts 'recursive)
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;; Recursive import
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(with-error-handling
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(map package->definition
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(filter identity
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(cran-recursive-import package-name
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#:repo (or (assoc-ref opts 'repo) 'cran)))))
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;; Single import
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(let ((sexp (cran->guix-package package-name
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#:repo (or (assoc-ref opts 'repo) 'cran))))
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(unless sexp
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(leave (G_ "failed to download description for package '~a'~%")
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package-name))
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sexp)))
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(()
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(leave (G_ "too few arguments~%")))
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((many ...)
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(leave (G_ "too many arguments~%")))))))
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