gnu: r-sva: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-sva): Move from here... * gnu/packages/bioconductor.scm (r-sva): ...to here.master
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@ -3790,6 +3790,37 @@ typically represent genomic ranges of interest and the columns represent
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samples.")
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samples.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-sva
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(package
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(name "r-sva")
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(version "3.38.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "sva" version))
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(sha256
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(base32
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"1hpzzg3qrgkd8kwg1m5gq94cikjgk9j4l1wk58fxl49s6fmd13zy"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-edger" ,r-edger)
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("r-genefilter" ,r-genefilter)
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("r-mgcv" ,r-mgcv)
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("r-biocparallel" ,r-biocparallel)
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("r-matrixstats" ,r-matrixstats)
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("r-limma" ,r-limma)))
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(home-page "https://bioconductor.org/packages/sva")
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(synopsis "Surrogate variable analysis")
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(description
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"This package contains functions for removing batch effects and other
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unwanted variation in high-throughput experiment. It also contains functions
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for identifying and building surrogate variables for high-dimensional data
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sets. Surrogate variables are covariates constructed directly from
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high-dimensional data like gene expression/RNA sequencing/methylation/brain
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imaging data that can be used in subsequent analyses to adjust for unknown,
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unmodeled, or latent sources of noise.")
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(license license:artistic2.0)))
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(define-public r-systempiper
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(define-public r-systempiper
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(package
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(package
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(name "r-systempiper")
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(name "r-systempiper")
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@ -8964,37 +8964,6 @@ resolution 5hmC data from experimental protocols such as oxBS-Seq and
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TAB-Seq.")
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TAB-Seq.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-sva
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(package
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(name "r-sva")
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(version "3.38.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "sva" version))
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(sha256
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(base32
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"1hpzzg3qrgkd8kwg1m5gq94cikjgk9j4l1wk58fxl49s6fmd13zy"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-edger" ,r-edger)
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("r-genefilter" ,r-genefilter)
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("r-mgcv" ,r-mgcv)
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("r-biocparallel" ,r-biocparallel)
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("r-matrixstats" ,r-matrixstats)
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("r-limma" ,r-limma)))
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(home-page "https://bioconductor.org/packages/sva")
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(synopsis "Surrogate variable analysis")
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(description
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"This package contains functions for removing batch effects and other
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unwanted variation in high-throughput experiment. It also contains functions
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for identifying and building surrogate variables for high-dimensional data
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sets. Surrogate variables are covariates constructed directly from
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high-dimensional data like gene expression/RNA sequencing/methylation/brain
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imaging data that can be used in subsequent analyses to adjust for unknown,
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unmodeled, or latent sources of noise.")
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(license license:artistic2.0)))
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(define-public r-raremetals2
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(define-public r-raremetals2
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(package
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(package
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(name "r-raremetals2")
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(name "r-raremetals2")
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