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gnu: mafft: Replace references to %build-inputs and %outputs. 

* gnu/packages/bioinformatics.scm (mafft)[arguments]: Replace references to
%outputs with a gexp; replace reference to %build-inputs in the 'wrap-programs
phase by binding INPUTS.
master
Ricardo Wurmus 2021-12-04 00:21:27 +01:00
parent 5cb2920b8d
commit 630671d2e8
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GPG Key ID: 197A5888235FACAC
1 changed files with 5 additions and 6 deletions
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11
gnu/packages/bioinformatics.scm
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@ -5221,10 +5221,9 @@ sequencing tag position and orientation.")
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; no automated tests, though there are tests in the read me
#:make-flags (let ((out (assoc-ref %outputs "out")))
(list (string-append "PREFIX=" out)
(string-append "BINDIR="
(string-append out "/bin"))))
#:make-flags ,#~(list (string-append "PREFIX=" #$output)
(string-append "BINDIR="
(string-append #$output "/bin")))
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'enter-dir
@ -5264,11 +5263,11 @@ sequencing tag position and orientation.")
#t))
(delete 'configure)
(add-after 'install 'wrap-programs
(lambda* (#:key outputs #:allow-other-keys)
(lambda* (#:key inputs outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin"))
(path (string-append
(assoc-ref %build-inputs "coreutils") "/bin:")))
(assoc-ref inputs "coreutils") "/bin:")))
(for-each (lambda (file)
(wrap-program file
`("PATH" ":" prefix (,path))))