me
/
guix
Archived
1
0
Fork 0

gnu: Add r-genomationdata.

* gnu/packages/bioinformatics.scm (r-genomationdata): New variable.
master
Ricardo Wurmus 2016-05-23 16:57:16 +02:00 committed by Ricardo Wurmus
parent aa3b391092
commit 64efa3078a
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 28 additions and 0 deletions

View File

@ -4776,6 +4776,34 @@ genomic feature data as long as it has minimal information on the locations of
genomic intervals. In addition, it can use BAM or BigWig files as input.")
(license license:artistic2.0)))
(define-public r-genomationdata
(package
(name "r-genomationdata")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://bioconductor.org/packages/"
"release/data/experiment/src/contrib/"
"genomationData_" version ".tar.gz"))
(sha256
(base32
"1xzq2j722d8lcn5bc3aq3yb34xwis2d0bpsf6jsq4xw1bg0bsy79"))))
(build-system r-build-system)
;; As this package provides little more than large data files, it doesn't
;; make sense to build substitutes.
(arguments `(#:substitutable? #f))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "http://bioinformatics.mdc-berlin.de/genomation/")
(synopsis "Experimental data for use with the genomation package")
(description
"This package contains experimental genetic data for use with the
genomation package. Included are Chip Seq, Methylation and Cage data,
downloaded from Encode.")
(license license:gpl3+)))
(define-public r-org-hs-eg-db
(package
(name "r-org-hs-eg-db")