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gnu: minimap2: Update to 2.28.

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* gnu/packages/bioinformatics.scm (minimap2): Update to 2.28.
[arguments]: Adjust custom 'install phase to not delete non-existent
file.  Remove trailing #t from phase.

Change-Id: Ie6cc21f2b761532f08967efea54d3a12b944f213
This commit is contained in:
Efraim Flashner 2024-05-06 23:40:45 +03:00
parent a4c0a58594
commit 6571231f2d
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GPG key ID: 41AAE7DCCA3D8351
1 changed files with 3 additions and 6 deletions
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gnu/packages/bioinformatics.scm
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@ -16622,7 +16622,7 @@ version does count multisplits.")
(define-public minimap2 (define-public minimap2
(package (package
(name "minimap2") (name "minimap2")
(version "2.24") (version "2.28")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
@ -16631,7 +16631,7 @@ version does count multisplits.")
"minimap2-" version ".tar.bz2")) "minimap2-" version ".tar.bz2"))
(sha256 (sha256
(base32 (base32
"05d6h2c1h95s5vblf1fijn9g0r4g69nsvkabji42j642y0gw7m4x")))) "1d50j9fdmmaj7sdf4f49xddc235f7032lwh5ijgi2afj6lkp39gz"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:tests? #f ; there are none `(#:tests? #f ; there are none
@ -16668,8 +16668,6 @@ version does count multisplits.")
(install-file "minimap2.1" man) (install-file "minimap2.1" man)
(map (cut install-file <> inc) (map (cut install-file <> inc)
(find-files "." "\\.h$")) (find-files "." "\\.h$"))
;; Not this file.
(delete-file (string-append inc "/emmintrin.h"))
(mkdir-p (string-append lib "/pkgconfig")) (mkdir-p (string-append lib "/pkgconfig"))
(with-output-to-file (string-append lib "/pkgconfig/minimap2.pc") (with-output-to-file (string-append lib "/pkgconfig/minimap2.pc")
(lambda _ (lambda _
@ -16683,8 +16681,7 @@ version does count multisplits.")
Description: A versatile pairwise aligner for genomic and spliced nucleotide sequence~@ Description: A versatile pairwise aligner for genomic and spliced nucleotide sequence~@
Libs: -L${libdir} -lminimap2~@ Libs: -L${libdir} -lminimap2~@
Cflags: -I${includedir}~%" Cflags: -I${includedir}~%"
out ,version)))) out ,version)))))))))
#t)))))
(inputs (inputs
(list zlib)) (list zlib))
(home-page "https://lh3.github.io/minimap2/") (home-page "https://lh3.github.io/minimap2/")