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gnu: python-scanpy: Use GUIX_PYTHONPATH. 

* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Use
GUIX_PYTHONPATH instead of PYTHONPATH.
master
Ricardo Wurmus 2021-11-21 00:39:57 +01:00
parent a22fb2d164
commit 664721422c
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1 changed files with 2 additions and 2 deletions
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@ -11956,10 +11956,10 @@ implementation differs in these ways:
;; packaged yet. ;; packaged yet.
(delete-file "scanpy/tests/external/test_scanorama_integrate.py") (delete-file "scanpy/tests/external/test_scanorama_integrate.py")
(setenv "PYTHONPATH" (setenv "GUIX_PYTHONPATH"
(string-append (getcwd) ":" (string-append (getcwd) ":"
(assoc-ref inputs "python-anndata:source") ":" (assoc-ref inputs "python-anndata:source") ":"
(getenv "PYTHONPATH"))) (getenv "GUIX_PYTHONPATH")))
(invoke "pytest" "-vv" (invoke "pytest" "-vv"
"-k" "-k"
;; Plot tests that fail. ;; Plot tests that fail.