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gnu: r-qtl2: Move to (gnu packages cran). 

* gnu/packages/bioinformatics.scm (r-qtl2): Move from here...
* gnu/packages/cran.scm (r-qtl2): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
master
zimoun 2020-09-11 20:08:43 +02:00 committed by Ricardo Wurmus
parent 496a52dc41
commit 66a8e62070
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2 changed files with 27 additions and 26 deletions
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26
gnu/packages/bioinformatics.scm
View File

@ -8510,32 +8510,6 @@ Stephens (1990).")
throughput genetic sequencing data sets using regression methods.") throughput genetic sequencing data sets using regression methods.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-qtl2
(package
(name "r-qtl2")
(version "0.22-11")
(source (origin
(method url-fetch)
(uri (cran-uri "qtl2" version))
(sha256
(base32 "0dfdzjylqzc92dcszawc8cyinxccjm3p36v9vcq9ma818pqcanmr"))))
(build-system r-build-system)
(propagated-inputs
`(("r-data-table" ,r-data-table)
("r-jsonlite" ,r-jsonlite)
("r-rcpp" ,r-rcpp)
("r-rcppeigen" ,r-rcppeigen)
("r-rsqlite" ,r-rsqlite)
("r-yaml" ,r-yaml)))
(home-page "https://kbroman.org/qtl2/")
(synopsis "Quantitative Trait Locus Mapping in Experimental Crosses")
(description
"This package provides a set of tools to perform @dfn{Quantitative Trait
Locus} (QTL) analysis in experimental crosses. It is a reimplementation of the
@code{R/qtl} package to better handle high-dimensional data and complex cross
designs. Broman et al. (2018) <doi:10.1534/genetics.118.301595>.")
(license license:gpl3)))
(define-public r-zlibbioc (define-public r-zlibbioc
(package (package
(name "r-zlibbioc") (name "r-zlibbioc")

27
gnu/packages/cran.scm
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@ -19,6 +19,7 @@
;;; Copyright © 2019 Nicolò Balzarotti <anothersms@gmail.com> ;;; Copyright © 2019 Nicolò Balzarotti <anothersms@gmail.com>
;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz> ;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz>
;;; Copyright © 2019 Arne Babenhauserheide <arne_bab@web.de> ;;; Copyright © 2019 Arne Babenhauserheide <arne_bab@web.de>
;;; Copyright © 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2020 Todor Kondić <tk.code@protonmail.com> ;;; Copyright © 2020 Todor Kondić <tk.code@protonmail.com>
;;; Copyright © 2020 Danjela Lura <danielaluraa@gmail.com> ;;; Copyright © 2020 Danjela Lura <danielaluraa@gmail.com>
;;; Copyright © 2020 Naga Malleswari <nagamalli@riseup.net> ;;; Copyright © 2020 Naga Malleswari <nagamalli@riseup.net>
@ -24356,3 +24357,29 @@ Using a hidden Markov model, R/qtl estimates genetic maps, to
identify genotyping errors, and to perform single-QTL and two-QTL, identify genotyping errors, and to perform single-QTL and two-QTL,
two-dimensional genome scans.") two-dimensional genome scans.")
(license license:gpl3))) (license license:gpl3)))
(define-public r-qtl2
(package
(name "r-qtl2")
(version "0.22-11")
(source (origin
(method url-fetch)
(uri (cran-uri "qtl2" version))
(sha256
(base32 "0dfdzjylqzc92dcszawc8cyinxccjm3p36v9vcq9ma818pqcanmr"))))
(build-system r-build-system)
(propagated-inputs
`(("r-data-table" ,r-data-table)
("r-jsonlite" ,r-jsonlite)
("r-rcpp" ,r-rcpp)
("r-rcppeigen" ,r-rcppeigen)
("r-rsqlite" ,r-rsqlite)
("r-yaml" ,r-yaml)))
(home-page "https://kbroman.org/qtl2/")
(synopsis "Quantitative Trait Locus Mapping in Experimental Crosses")
(description
"This package provides a set of tools to perform @dfn{Quantitative Trait
Locus} (QTL) analysis in experimental crosses. It is a reimplementation of the
@code{R/qtl} package to better handle high-dimensional data and complex cross
designs. Broman et al. (2018) <doi:10.1534/genetics.118.301595>.")
(license license:gpl3)))