gnu: Move r-bisquerna.
* gnu/packages/bioinformatics.scm (r-bisquerna): Move to ... * gnu/packages/cran.scm: ... here.master
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@ -7897,31 +7897,6 @@ manipulating genomic intervals and variables defined along a genome.")
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on Bioconductor or which replace R functions.")
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(license license:artistic2.0)))
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(define-public r-bisquerna
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(package
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(name "r-bisquerna")
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(version "1.0.4")
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(source (origin
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(method url-fetch)
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(uri (cran-uri "BisqueRNA" version))
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(sha256
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(base32
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"01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2"))))
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(properties `((upstream-name . "BisqueRNA")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-limsolve" ,r-limsolve)))
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(home-page "https://www.biorxiv.org/content/10.1101/669911v1")
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(synopsis "Decomposition of Bulk Expression with Single-Cell Sequencing")
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(description "This package provides tools to accurately estimate cell type
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abundances from heterogeneous bulk expression. A reference-based method
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utilizes single-cell information to generate a signature matrix and
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transformation of bulk expression for accurate regression based estimates.
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A marker-based method utilizes known cell-specific marker genes to measure
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relative abundances across samples.")
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(license license:gpl3)))
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(define-public r-annotationdbi
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(package
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(name "r-annotationdbi")
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@ -2183,6 +2183,31 @@ where the bound function accepts additional arguments.")
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bindings that call a C++ function.")
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(license license:expat)))
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(define-public r-bisquerna
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(package
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(name "r-bisquerna")
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(version "1.0.4")
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(source (origin
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(method url-fetch)
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(uri (cran-uri "BisqueRNA" version))
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(sha256
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(base32
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"01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2"))))
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(properties `((upstream-name . "BisqueRNA")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-limsolve" ,r-limsolve)))
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(home-page "https://www.biorxiv.org/content/10.1101/669911v1")
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(synopsis "Decomposition of bulk expression with single-cell sequencing")
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(description "This package provides tools to accurately estimate cell type
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abundances from heterogeneous bulk expression. A reference-based method
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utilizes single-cell information to generate a signature matrix and
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transformation of bulk expression for accurate regression based estimates.
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A marker-based method utilizes known cell-specific marker genes to measure
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relative abundances across samples.")
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(license license:gpl3)))
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(define-public r-auc
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(package
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(name "r-auc")
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