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gnu: Add r-derfinder.

* gnu/packages/bioconductor.scm (r-derfinder): New variable.
Ricardo Wurmus 2023-08-28 17:27:46 +02:00
parent 71a7dcb268
commit 67f4383769
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@ -4960,6 +4960,52 @@ space. This can help to create visualisations that are more representative of
heterogeneity in the original high-dimensional space.")
(license license:expat)))
(define-public r-derfinder
(package
(name "r-derfinder")
(version "1.34.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "derfinder" version))
(sha256
(base32
"1gb65hk26ffn0njsgwgk43z9i9bcvx89pz5m9x951c2a07c1xrcw"))))
(properties `((upstream-name . "derfinder")))
(build-system r-build-system)
(propagated-inputs (list r-annotationdbi
r-biocgenerics
r-biocparallel
r-bumphunter
r-derfinderhelper
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicfiles
r-genomicranges
r-hmisc
r-iranges
r-qvalue
r-rsamtools
r-rtracklayer
r-s4vectors))
(native-inputs (list r-knitr))
(home-page "https://github.com/lcolladotor/derfinder")
(synopsis
"Annotation-agnostic differential expression analysis of RNA-seq data")
(description
"This package provides functions for annotation-agnostic differential
expression analysis of RNA-seq data. Two implementations of the DER Finder
approach are included in this package:
@enumerate
@item single base-level F-statistics and
@item DER identification at the expressed regions-level.
@end enumerate
The DER Finder approach can also be used to identify differentially bounded
@code{ChIP-seq} peaks.")
(license license:artistic2.0)))
(define-public r-derfinderhelper
(package
(name "r-derfinderhelper")