gnu: Add r-derfinder.
* gnu/packages/bioconductor.scm (r-derfinder): New variable.
parent
71a7dcb268
commit
67f4383769
|
@ -4960,6 +4960,52 @@ space. This can help to create visualisations that are more representative of
|
|||
heterogeneity in the original high-dimensional space.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public r-derfinder
|
||||
(package
|
||||
(name "r-derfinder")
|
||||
(version "1.34.0")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "derfinder" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1gb65hk26ffn0njsgwgk43z9i9bcvx89pz5m9x951c2a07c1xrcw"))))
|
||||
(properties `((upstream-name . "derfinder")))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs (list r-annotationdbi
|
||||
r-biocgenerics
|
||||
r-biocparallel
|
||||
r-bumphunter
|
||||
r-derfinderhelper
|
||||
r-genomeinfodb
|
||||
r-genomicalignments
|
||||
r-genomicfeatures
|
||||
r-genomicfiles
|
||||
r-genomicranges
|
||||
r-hmisc
|
||||
r-iranges
|
||||
r-qvalue
|
||||
r-rsamtools
|
||||
r-rtracklayer
|
||||
r-s4vectors))
|
||||
(native-inputs (list r-knitr))
|
||||
(home-page "https://github.com/lcolladotor/derfinder")
|
||||
(synopsis
|
||||
"Annotation-agnostic differential expression analysis of RNA-seq data")
|
||||
(description
|
||||
"This package provides functions for annotation-agnostic differential
|
||||
expression analysis of RNA-seq data. Two implementations of the DER Finder
|
||||
approach are included in this package:
|
||||
|
||||
@enumerate
|
||||
@item single base-level F-statistics and
|
||||
@item DER identification at the expressed regions-level.
|
||||
@end enumerate
|
||||
|
||||
The DER Finder approach can also be used to identify differentially bounded
|
||||
@code{ChIP-seq} peaks.")
|
||||
(license license:artistic2.0)))
|
||||
|
||||
(define-public r-derfinderhelper
|
||||
(package
|
||||
(name "r-derfinderhelper")
|
||||
|
|
Reference in New Issue