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gnu: pbcopper: Update to 2.0.0.

* gnu/packages/bioinformatics.scm (pbcopper): Update to 2.0.0.
Ricardo Wurmus 2022-12-13 15:26:11 +01:00
parent 53f65f7315
commit 684d046e6c
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GPG Key ID: 197A5888235FACAC
1 changed files with 29 additions and 32 deletions

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@ -496,39 +496,36 @@ BED, GFF/GTF, VCF.")
(list samtools zlib)))) (list samtools zlib))))
(define-public pbcopper (define-public pbcopper
;; This is the latest commit at the time of this writing. (package
(let ((commit "ad4143afd25a0bd6adc977c544865c992a515841") (name "pbcopper")
(revision "1")) (version "2.0.0")
(package (source (origin
(name "pbcopper") (method git-fetch)
(version (git-version "1.9.0" revision commit)) (uri (git-reference
(source (origin (url "https://github.com/PacificBiosciences/pbcopper")
(method git-fetch) (commit (string-append "v" version))))
(uri (git-reference (file-name (git-file-name name version))
(url "https://github.com/PacificBiosciences/pbcopper") (sha256
(commit commit))) (base32
(file-name (git-file-name name version)) "04mgmla96bsmr9gijbn3ibspry625cv4kqqxv70z4jq4qc407jy3"))))
(sha256 (build-system meson-build-system)
(base32 (arguments
"1qxkbpdkamfisnk36lpi1vdvf3p1lg2hdqna3xgd94pz52bwbmp7")))) `(#:phases
(build-system meson-build-system) (modify-phases %standard-phases
(arguments (add-after 'unpack 'patch-meson-files
`(#:phases (lambda _
(modify-phases %standard-phases (substitute* "meson.build"
(add-after 'unpack 'patch-meson-files (("-msse4.1") "")))))))
(lambda* (#:key inputs #:allow-other-keys) (inputs
(substitute* "meson.build" (list boost))
(("-msse4.1") ""))))))) (native-inputs
(inputs (list googletest pkg-config))
(list boost)) (home-page "https://github.com/PacificBiosciences/pbcopper")
(native-inputs (synopsis "Data structures, algorithms, and utilities for PacBio C++ applications")
(list googletest pkg-config)) (description
(home-page "https://github.com/PacificBiosciences/pbcopper") "The pbcopper library provides a suite of data structures, algorithms,
(synopsis "Data structures, algorithms, and utilities for PacBio C++ applications")
(description
"The pbcopper library provides a suite of data structures, algorithms,
and utilities for PacBio C++ applications.") and utilities for PacBio C++ applications.")
(license license:bsd-3)))) (license license:bsd-3)))
(define-public r-btools (define-public r-btools
(let ((commit "fa21d4ca01d37ea4d98b45582453f3bf95cbc2b5") (let ((commit "fa21d4ca01d37ea4d98b45582453f3bf95cbc2b5")