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gnu: r-gwascat: Move to (gnu packages bioconductor). 

* gnu/packages/bioinformatics.scm (r-gwascat): Move from here...
* gnu/packages/bioconductor.scm (r-gwascat): ...to here.
master
zimoun 2020-12-23 19:06:27 +01:00 committed by Ricardo Wurmus
parent 838db0de5e
commit 69a5e066c1
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GPG Key ID: 197A5888235FACAC
2 changed files with 33 additions and 33 deletions
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33
gnu/packages/bioconductor.scm
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@ -9241,6 +9241,39 @@ preprocessing of cytometry data, including i) normalization using bead
standards, ii) single-cell deconvolution, and iii) bead-based compensation.") standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
(license license:gpl2+))) (license license:gpl2+)))
(define-public r-gwascat
(package
(name "r-gwascat")
(version "2.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "gwascat" version))
(sha256
(base32
"1aqi1ny93virnzsxkh9ccx3mws70bgv0r8nwgla09vffb7f16nna"))))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biocfilecache" ,r-biocfilecache)
("r-biostrings" ,r-biostrings)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-readr" ,r-readr)
("r-s4vectors" ,r-s4vectors)
("r-snpstats" ,r-snpstats)
("r-variantannotation" ,r-variantannotation)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/gwascat")
(synopsis "Tools for data in the EMBL-EBI GWAS catalog")
(description
"This package provides tools for representing and modeling data in the
EMBL-EBI GWAS catalog.")
(license license:artistic2.0)))
(define-public r-kegggraph (define-public r-kegggraph
(package (package
(name "r-kegggraph") (name "r-kegggraph")

33
gnu/packages/bioinformatics.scm
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@ -10834,39 +10834,6 @@ grid graphics package. This results in genomic information plotted together
with your data.") with your data.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-gwascat
(package
(name "r-gwascat")
(version "2.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "gwascat" version))
(sha256
(base32
"1aqi1ny93virnzsxkh9ccx3mws70bgv0r8nwgla09vffb7f16nna"))))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biocfilecache" ,r-biocfilecache)
("r-biostrings" ,r-biostrings)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-readr" ,r-readr)
("r-s4vectors" ,r-s4vectors)
("r-snpstats" ,r-snpstats)
("r-variantannotation" ,r-variantannotation)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/gwascat")
(synopsis "Tools for data in the EMBL-EBI GWAS catalog")
(description
"This package provides tools for representing and modeling data in the
EMBL-EBI GWAS catalog.")
(license license:artistic2.0)))
(define-public r-dropbead (define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2")) (revision "2"))