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gnu: r-gqtlbase: Update to 1.21.1.

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Co-authored-by: Ricardo Wurmus <rekado@elephly.net>

* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.21.1.
[arguments]: Add phase to patch broken NAMESPACE file.
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zimoun 2020-10-30 16:01:26 +01:00 • committed by Ricardo Wurmus
parent 64f9fb308f
commit 6a4818716d
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1 changed files with 12 additions and 2 deletions
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gnu/packages/bioinformatics.scm
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@ -10563,16 +10563,26 @@ interval to data view, mismatch pileup, and several splicing summaries.")
(define-public r-gqtlbase
(package
(name "r-gqtlbase")
(version "1.20.4")
(version "1.21.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "gQTLBase" version))
(sha256
(base32
"1ly14vhhqxjpbxjypi6ppd37dycabdhf4ny4nsvp9969k418zv41"))))
"0nipibm1bk9k70ajbw1f6vjmz0dh7gk21l17q3m54bnawxsggrfh"))))
(properties `((upstream-name . "gQTLBase")))
(build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
;; This is an upstream bug.
(add-after 'unpack 'fix-imports
(lambda _
(substitute* "NAMESPACE"
((".*maxffmode.*") "")
(("importFrom\\(ff,.*") "import(ff)\n"))
#t)))))
(propagated-inputs
`(("r-batchjobs" ,r-batchjobs)
("r-bbmisc" ,r-bbmisc)