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gnu: r-scater: Move to (gnu packages bioconductor). 

* gnu/packages/bioinformatics.scm (r-scater): Move from here...
* gnu/packages/bioconductor.scm (r-scater): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
master
zimoun 2020-09-14 18:07:41 +02:00 committed by Ricardo Wurmus
parent 1193b77e60
commit 6b1946b334
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GPG Key ID: 197A5888235FACAC
2 changed files with 37 additions and 37 deletions
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37
gnu/packages/bioconductor.scm
View File

@ -8347,6 +8347,43 @@ routines.")
objects from the @code{graph} package.")
(license license:epl1.0)))
(define-public r-scater
(package
(name "r-scater")
(version "1.16.2")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "scater" version))
(sha256
(base32
"1pa5wvgjb30rw1vsjwbnn07ss3sc5n8ck5d7khdby4r2s9177s33"))))
(build-system r-build-system)
(propagated-inputs
`(("r-beachmat" ,r-beachmat)
("r-biocgenerics" ,r-biocgenerics)
("r-biocneighbors" ,r-biocneighbors)
("r-biocparallel" ,r-biocparallel)
("r-biocsingular" ,r-biocsingular)
("r-delayedarray" ,r-delayedarray)
("r-delayedmatrixstats" ,r-delayedmatrixstats)
("r-ggbeeswarm" ,r-ggbeeswarm)
("r-ggplot2" ,r-ggplot2)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
("r-rlang" ,r-rlang)
("r-s4vectors" ,r-s4vectors)
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-viridis" ,r-viridis)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/davismcc/scater")
(synopsis "Single-cell analysis toolkit for gene expression data in R")
(description "This package provides a collection of tools for doing
various analyses of single-cell RNA-seq gene expression data, with a focus on
quality control.")
(license license:gpl2+)))
(define-public r-scran
(package
(name "r-scran")

37
gnu/packages/bioinformatics.scm
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@ -10820,43 +10820,6 @@ factors for each cell, along with the usual metadata for genes and
libraries.")
(license license:gpl3)))
(define-public r-scater
(package
(name "r-scater")
(version "1.16.2")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "scater" version))
(sha256
(base32
"1pa5wvgjb30rw1vsjwbnn07ss3sc5n8ck5d7khdby4r2s9177s33"))))
(build-system r-build-system)
(propagated-inputs
`(("r-beachmat" ,r-beachmat)
("r-biocgenerics" ,r-biocgenerics)
("r-biocneighbors" ,r-biocneighbors)
("r-biocparallel" ,r-biocparallel)
("r-biocsingular" ,r-biocsingular)
("r-delayedarray" ,r-delayedarray)
("r-delayedmatrixstats" ,r-delayedmatrixstats)
("r-ggbeeswarm" ,r-ggbeeswarm)
("r-ggplot2" ,r-ggplot2)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
("r-rlang" ,r-rlang)
("r-s4vectors" ,r-s4vectors)
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-viridis" ,r-viridis)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/davismcc/scater")
(synopsis "Single-cell analysis toolkit for gene expression data in R")
(description "This package provides a collection of tools for doing
various analyses of single-cell RNA-seq gene expression data, with a focus on
quality control.")
(license license:gpl2+)))
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))