gnu: r-scater: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-scater): Move from here... * gnu/packages/bioconductor.scm (r-scater): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>master
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@ -8347,6 +8347,43 @@ routines.")
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objects from the @code{graph} package.")
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objects from the @code{graph} package.")
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(license license:epl1.0)))
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(license license:epl1.0)))
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(define-public r-scater
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(package
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(name "r-scater")
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(version "1.16.2")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "scater" version))
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(sha256
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(base32
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"1pa5wvgjb30rw1vsjwbnn07ss3sc5n8ck5d7khdby4r2s9177s33"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-beachmat" ,r-beachmat)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocneighbors" ,r-biocneighbors)
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("r-biocparallel" ,r-biocparallel)
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("r-biocsingular" ,r-biocsingular)
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("r-delayedarray" ,r-delayedarray)
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("r-delayedmatrixstats" ,r-delayedmatrixstats)
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("r-ggbeeswarm" ,r-ggbeeswarm)
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("r-ggplot2" ,r-ggplot2)
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("r-matrix" ,r-matrix)
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("r-rcpp" ,r-rcpp)
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("r-rlang" ,r-rlang)
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("r-s4vectors" ,r-s4vectors)
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("r-singlecellexperiment" ,r-singlecellexperiment)
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("r-summarizedexperiment" ,r-summarizedexperiment)
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("r-viridis" ,r-viridis)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://github.com/davismcc/scater")
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(synopsis "Single-cell analysis toolkit for gene expression data in R")
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(description "This package provides a collection of tools for doing
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various analyses of single-cell RNA-seq gene expression data, with a focus on
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quality control.")
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(license license:gpl2+)))
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(define-public r-scran
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(define-public r-scran
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(package
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(package
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(name "r-scran")
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(name "r-scran")
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@ -10820,43 +10820,6 @@ factors for each cell, along with the usual metadata for genes and
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libraries.")
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libraries.")
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(license license:gpl3)))
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(license license:gpl3)))
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(define-public r-scater
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(package
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(name "r-scater")
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(version "1.16.2")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "scater" version))
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(sha256
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(base32
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"1pa5wvgjb30rw1vsjwbnn07ss3sc5n8ck5d7khdby4r2s9177s33"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-beachmat" ,r-beachmat)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocneighbors" ,r-biocneighbors)
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("r-biocparallel" ,r-biocparallel)
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("r-biocsingular" ,r-biocsingular)
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("r-delayedarray" ,r-delayedarray)
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("r-delayedmatrixstats" ,r-delayedmatrixstats)
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("r-ggbeeswarm" ,r-ggbeeswarm)
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("r-ggplot2" ,r-ggplot2)
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("r-matrix" ,r-matrix)
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("r-rcpp" ,r-rcpp)
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("r-rlang" ,r-rlang)
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("r-s4vectors" ,r-s4vectors)
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("r-singlecellexperiment" ,r-singlecellexperiment)
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("r-summarizedexperiment" ,r-summarizedexperiment)
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("r-viridis" ,r-viridis)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://github.com/davismcc/scater")
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(synopsis "Single-cell analysis toolkit for gene expression data in R")
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(description "This package provides a collection of tools for doing
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various analyses of single-cell RNA-seq gene expression data, with a focus on
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quality control.")
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(license license:gpl2+)))
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(define-public r-dropbead
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(define-public r-dropbead
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(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
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(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
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(revision "2"))
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(revision "2"))
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