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gnu: Add r-decontam.

* gnu/packages/bioconductor.scm (r-decontam): New variable.
Mădălin Ionel Patrașcu 2022-10-30 01:16:08 +02:00 committed by Ricardo Wurmus
parent fc27bf5d74
commit 6e0361d035
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1 changed files with 26 additions and 0 deletions

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@ -3323,6 +3323,32 @@ different constituting cell types and predicted cell type proportions of
single expression profiles.") single expression profiles.")
(license license:gpl2))) (license license:gpl2)))
(define-public r-decontam
(package
(name "r-decontam")
(version "1.16.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "decontam" version))
(sha256
(base32
"1g9hcfcfnpq6z21069yw0pyzncwznmvxb2xalg4y6y1604dy98q9"))))
(properties `((upstream-name . "decontam")))
(build-system r-build-system)
(propagated-inputs
(list r-ggplot2 r-reshape2))
(native-inputs (list r-knitr))
(home-page "https://github.com/benjjneb/decontam")
(synopsis
"Identification of contaminants in marker-gene and metagenomics data")
(description
"This package offers simple statistical identification of contaminating
sequence features in marker-gene or metagenomics data. It works on any kind
of feature derived from environmental sequencing data (e.g. ASVs, OTUs,
taxonomic groups, MAGs, etc). Requires DNA quantitation data or sequenced
negative control samples.")
(license license:artistic2.0)))
(define-public r-deconvr (define-public r-deconvr
(package (package
(name "r-deconvr") (name "r-deconvr")