gnu: Add r-decontam.
* gnu/packages/bioconductor.scm (r-decontam): New variable.
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@ -3323,6 +3323,32 @@ different constituting cell types and predicted cell type proportions of
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single expression profiles.")
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(license license:gpl2)))
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(define-public r-decontam
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(package
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(name "r-decontam")
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(version "1.16.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "decontam" version))
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(sha256
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(base32
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"1g9hcfcfnpq6z21069yw0pyzncwznmvxb2xalg4y6y1604dy98q9"))))
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(properties `((upstream-name . "decontam")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-ggplot2 r-reshape2))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/benjjneb/decontam")
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(synopsis
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"Identification of contaminants in marker-gene and metagenomics data")
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(description
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"This package offers simple statistical identification of contaminating
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sequence features in marker-gene or metagenomics data. It works on any kind
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of feature derived from environmental sequencing data (e.g. ASVs, OTUs,
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taxonomic groups, MAGs, etc). Requires DNA quantitation data or sequenced
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negative control samples.")
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(license license:artistic2.0)))
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(define-public r-deconvr
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(package
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(name "r-deconvr")
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