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gnu: pigx-sars-cov-2: Update to 0.0.7.

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* gnu/packages/bioinformatics.scm (pigx-sars-cov-2): Update to 0.0.7.
[inputs]: Remove bbmap and prinseq; add r-viridis.
[arguments]: Remove autoreconf phase.
This commit is contained in:
Ricardo Wurmus 2022-05-06 14:11:18 +02:00
parent f550c0ccb0
commit 6f5cbac67d
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GPG key ID: 197A5888235FACAC
1 changed files with 6 additions and 10 deletions
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16
gnu/packages/bioinformatics.scm
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@ -11310,23 +11310,20 @@ based methods.")
(define-public pigx-sars-cov-2
(package
(name "pigx-sars-cov-2")
(version "0.0.5")
(version "0.0.7")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/BIMSBbioinfo/pigx_sarscov2_ww/"
"releases/download/v" version
"/pigx_sars-cov2-ww-" version ".tar.gz"))
(uri (string-append "https://github.com/BIMSBbioinfo/pigx_sars-cov-2"
"/releases/download/v" version
"/pigx_sars-cov-2-" version ".tar.gz"))
(sha256
(base32
"1fkr9gp09zl5n7kdqmy9lrnq28k2z97wg74wgkyfssfyxvmq9cr2"))))
"1bqm03ypf7l8lrkjkydxzn7vy0qlps3v9c5cpz2wb008zw44bi3k"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ;requires huge kraken database
#:phases
(modify-phases %standard-phases
(add-before 'bootstrap 'autoreconf
(lambda _
(invoke "autoreconf" "-vif")))
(add-before 'configure 'set-PYTHONPATH
(lambda _
(setenv "PYTHONPATH" (getenv "GUIX_PYTHONPATH")))))))
@ -11334,7 +11331,6 @@ based methods.")
(list automake autoconf))
(inputs
(list bash-minimal
bbmap
bedtools
bwa
ensembl-vep
@ -11345,7 +11341,6 @@ based methods.")
krona-tools
lofreq
multiqc
prinseq
python-pyyaml
python-wrapper
r-base64url
@ -11361,6 +11356,7 @@ based methods.")
r-rmarkdown
r-stringr
r-tidyr
r-viridis
samtools
snakemake
wget))