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gnu: Add r-singlecellexperiment.

* gnu/packages/bioinformatics.scm (r-singlecellexperiment): New variable.
master
Ricardo Wurmus 2018-02-12 15:19:11 +01:00
parent 9ec0898824
commit 6fb1dc17a3
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1 changed files with 27 additions and 0 deletions

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@ -10511,6 +10511,33 @@ variety of commonly used matrix types, including sparse and HDF5-backed
matrices.")
(license license:gpl3)))
(define-public r-singlecellexperiment
(package
(name "r-singlecellexperiment")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "SingleCellExperiment" version))
(sha256
(base32
"1r276i97w64a5vdlg6952gkj7bls909p42zl8fn8yz87cdwyaars"))))
(properties
`((upstream-name . "SingleCellExperiment")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(home-page "https://bioconductor.org/packages/SingleCellExperiment")
(synopsis "S4 classes for single cell data")
(description "This package defines an S4 class for storing data from
single-cell experiments. This includes specialized methods to store and
retrieve spike-in information, dimensionality reduction coordinates and size
factors for each cell, along with the usual metadata for genes and
libraries.")
(license license:gpl3)))
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package