gnu: Add r-riboseqr.
* gnu/packages/bioconductor.scm (r-riboseqr): New variable.master
parent
0490f9de88
commit
6ffdfe6a01
|
@ -575,3 +575,31 @@ the counting of genomic sequence reads on CDS, 3'UTR, and 5'UTR, and plotting
|
||||||
of count data: pairs, log fold-change, codon frequency and coverage
|
of count data: pairs, log fold-change, codon frequency and coverage
|
||||||
assessment, principal component analysis on codon coverage.")
|
assessment, principal component analysis on codon coverage.")
|
||||||
(license license:gpl3)))
|
(license license:gpl3)))
|
||||||
|
|
||||||
|
(define-public r-riboseqr
|
||||||
|
(package
|
||||||
|
(name "r-riboseqr")
|
||||||
|
(version "1.14.0")
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (bioconductor-uri "riboSeqR" version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"0xavd1cdhi8qfjn9a1hjhflyg6jq1ydvv56z12gjz572pwz2knvn"))))
|
||||||
|
(properties `((upstream-name . "riboSeqR")))
|
||||||
|
(build-system r-build-system)
|
||||||
|
(propagated-inputs
|
||||||
|
`(("r-abind" ,r-abind)
|
||||||
|
("r-bayseq" ,r-bayseq)
|
||||||
|
("r-genomeinfodb" ,r-genomeinfodb)
|
||||||
|
("r-genomicranges" ,r-genomicranges)
|
||||||
|
("r-iranges" ,r-iranges)
|
||||||
|
("r-rsamtools" ,r-rsamtools)
|
||||||
|
("r-seqlogo" ,r-seqlogo)))
|
||||||
|
(home-page "https://bioconductor.org/packages/riboSeqR/")
|
||||||
|
(synopsis "Analysis of sequencing data from ribosome profiling experiments")
|
||||||
|
(description
|
||||||
|
"This package provides plotting functions, frameshift detection and
|
||||||
|
parsing of genetic sequencing data from ribosome profiling experiments.")
|
||||||
|
(license license:gpl3)))
|
||||||
|
|
Reference in New Issue