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gnu: Add r-sccore.

* gnu/packages/cran.scm (r-sccore): New variable.
master
Mădălin Ionel Patrașcu 2023-02-27 11:28:41 +01:00 committed by Ricardo Wurmus
parent 3efea1fc14
commit 7018092b0e
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@ -22440,6 +22440,49 @@ errors and possible semantic issues. It supports on the fly checking of R
code edited with @code{RStudio IDE}, @code{Emacs} and @code{Vim}.")
(license license:expat)))
(define-public r-sccore
(package
(name "r-sccore")
(version "1.0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "sccore" version))
(sha256
(base32 "12gm7pb6xbvf9kdsgl7ldw1c54ga9fgk99ps2kx2cq91q9m0ld4r"))))
(properties `((upstream-name . "sccore")))
(build-system r-build-system)
(propagated-inputs
(list r-dplyr
r-ggplot2
r-ggrepel
r-igraph
r-irlba
r-magrittr
r-matrix
r-pbmcapply
r-proc
r-rcpp
r-rcpparmadillo
r-rcppeigen
r-rcppprogress
r-rlang
r-scales
r-tibble
r-uwot
r-withr))
(home-page "https://github.com/kharchenkolab/sccore")
(synopsis "Core utilities for single-cell RNA-Seq")
(description
"This package implements core utilities for single-cell RNA-seq data analysis.
Contained within are utility functions for working with @acronym{DE,
differential expression} matrices and count matrices, a collection of
functions for manipulating and plotting data via ggplot2, and functions to
work with cell graphs and cell embeddings. Graph-based methods include
embedding kNN cell graphs into a UMAP, collapsing vertices of each cluster in
the graph, and propagating graph labels.")
(license license:gpl3)))
(define-public r-scs
(package
(name "r-scs")