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@ -22440,6 +22440,49 @@ errors and possible semantic issues. It supports on the fly checking of R
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code edited with @code{RStudio IDE}, @code{Emacs} and @code{Vim}.")
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(license license:expat)))
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(define-public r-sccore
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(package
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(name "r-sccore")
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(version "1.0.2")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "sccore" version))
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(sha256
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(base32 "12gm7pb6xbvf9kdsgl7ldw1c54ga9fgk99ps2kx2cq91q9m0ld4r"))))
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(properties `((upstream-name . "sccore")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-dplyr
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r-ggplot2
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r-ggrepel
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r-igraph
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r-irlba
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r-magrittr
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r-matrix
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r-pbmcapply
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r-proc
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r-rcpp
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r-rcpparmadillo
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r-rcppeigen
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r-rcppprogress
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r-rlang
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r-scales
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r-tibble
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r-uwot
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r-withr))
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(home-page "https://github.com/kharchenkolab/sccore")
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(synopsis "Core utilities for single-cell RNA-Seq")
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(description
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"This package implements core utilities for single-cell RNA-seq data analysis.
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Contained within are utility functions for working with @acronym{DE,
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differential expression} matrices and count matrices, a collection of
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functions for manipulating and plotting data via ggplot2, and functions to
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work with cell graphs and cell embeddings. Graph-based methods include
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embedding kNN cell graphs into a UMAP, collapsing vertices of each cluster in
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the graph, and propagating graph labels.")
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(license license:gpl3)))
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(define-public r-scs
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(package
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(name "r-scs")
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