gnu: Add r-leidenbase.
* gnu/packages/bioconductor.scm (r-leidenbase): New variable.
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@ -6371,6 +6371,40 @@ tasks on single cell expression data. It is designed to work with RNA-Seq and
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qPCR data, but could be used with other types as well.")
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qPCR data, but could be used with other types as well.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-leidenbase
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(let ((commit "430f22af6982cc7d2e6e77f6b0df47bc970dcbce")
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(revision "1"))
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(package
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(name "r-leidenbase")
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(version (git-version "0.1.3" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/cole-trapnell-lab/leidenbase")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0ylqsmdpv4xq6f6ldxvwkhk33a9i1jcgk60zvksk3iplykfzd6c0"))))
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(properties `((upstream-name . "leidenbase")))
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(build-system r-build-system)
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(inputs
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`(("zlib" ,zlib)))
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(native-inputs
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`(("gfortran" ,gfortran)))
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(propagated-inputs
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`(("r-igraph" ,r-igraph)))
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(home-page "https://github.com/cole-trapnell-lab/leidenbase")
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(synopsis "R and C wrappers to run the Leiden find_partition function")
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(description
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"This package provides an R to C interface that runs the Leiden
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community detection algorithm to find a basic partition. It runs the
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equivalent of the @code{find_partition} function. This package includes the
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required source code files from the official Leidenalg distribution and
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several functions from the R igraph package.")
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(license license:gpl3+))))
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(define-public r-monocle3
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(define-public r-monocle3
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(package
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(package
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(name "r-monocle3")
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(name "r-monocle3")
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