me
/
guix
Archived
1
0
Fork 0

gnu: Add r-activedriverwgs.

* gnu/packages/bioconductor.scm (r-activedriverwgs): New variable.
master
Ricardo Wurmus 2019-12-13 18:40:58 +01:00
parent bd74d7e6fc
commit 72b67e0b36
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 34 additions and 0 deletions

View File

@ -6059,3 +6059,37 @@ features (e.g. genes, microRNAs).")
data. This modified test allows for testing differential expression in qPCR
data.")
(license license:gpl2+)))
;; This is a CRAN package, but it depends on Bioconductor packages, so we put
;; it here.
(define-public r-activedriverwgs
(package
(name "r-activedriverwgs")
(version "1.0.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "ActiveDriverWGS" version))
(sha256
(base32
"08l9dj8d3cd74z1dqn8n4yqykwvqjxsfa067wnxyh7xnfvvnm5v1"))))
(properties
`((upstream-name . "ActiveDriverWGS")))
(build-system r-build-system)
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-plyr" ,r-plyr)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://cran.r-project.org/web/packages/ActiveDriverWGS/")
(synopsis "Driver discovery tool for cancer whole genomes")
(description
"This package provides a method for finding an enrichment of cancer
simple somatic mutations (SNVs and Indels) in functional elements across the
human genome. ActiveDriverWGS detects coding and noncoding driver elements
using whole genome sequencing data.")
(license license:gpl3)))