gnu: r-valr: Update to 0.6.4.
* gnu/packages/cran.scm (r-valr): Move from here... * gnu/packages/bioconductor.scm (r-valr): ...to here. Update to 0.6.4. [propagated-inputs]: Add r-rtracklayer.master
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@ -4766,6 +4766,39 @@ provided as a matrix which can be used as an offset for different expression
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of gene-level counts.")
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of gene-level counts.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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;; This is a CRAN package, but it depends on a Bioconductor package.
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(define-public r-valr
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(package
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(name "r-valr")
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(version "0.6.4")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "valr" version))
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(sha256
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(base32
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"0dd41irvibh6rwi52bw4zg4m7wpyihlp1kdkb8fdji3csw2fiz4k"))))
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(build-system r-build-system)
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(propagated-inputs
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(list r-broom
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r-dplyr
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r-ggplot2
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r-rcpp
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r-readr
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r-rlang
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r-rtracklayer ;bioconductor package
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r-stringr
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r-tibble))
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(native-inputs
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(list r-knitr))
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(home-page "https://github.com/rnabioco/valr")
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(synopsis "Genome interval arithmetic in R")
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(description
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"This package enables you to read and manipulate genome intervals and
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signals. It provides functionality similar to command-line tool suites within
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R, enabling interactive analysis and visualization of genome-scale data.")
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(license license:expat)))
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(define-public r-variantannotation
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(define-public r-variantannotation
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(package
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(package
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(name "r-variantannotation")
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(name "r-variantannotation")
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@ -15677,37 +15677,6 @@ can also be used to join clusters obtained from affinity propagation. Various
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plotting functions are available for analyzing clustering results.")
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plotting functions are available for analyzing clustering results.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public r-valr
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(package
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(name "r-valr")
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(version "0.6.3")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "valr" version))
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(sha256
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(base32
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"1lzdlw0mw06rymyjzwf4i8rx1z6zxpwxxqfsc9ggqlnhq6bfhy93"))))
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(build-system r-build-system)
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(propagated-inputs
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(list r-broom
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r-dplyr
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r-ggplot2
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r-rcpp
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r-readr
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r-rlang
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r-stringr
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r-tibble))
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(native-inputs
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(list r-knitr))
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(home-page "https://github.com/rnabioco/valr")
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(synopsis "Genome interval arithmetic in R")
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(description
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"This package enables you to read and manipulate genome intervals and
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signals. It provides functionality similar to command-line tool suites within
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R, enabling interactive analysis and visualization of genome-scale data.")
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(license license:expat)))
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(define-public r-rematch2
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(define-public r-rematch2
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(package
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(package
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(name "r-rematch2")
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(name "r-rematch2")
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