gnu: Add r-kegggraph.
* gnu/packages/bioconductor.scm (r-kegggraph): New variable.
This commit is contained in:
		
							parent
							
								
									eb2f1a7dd9
								
							
						
					
					
						commit
						7395458d40
					
				
					 1 changed files with 26 additions and 0 deletions
				
			
		| 
						 | 
					@ -9213,3 +9213,29 @@ CATALYST (Cytometry dATa anALYSis Tools) to provide a pipeline for
 | 
				
			||||||
preprocessing of cytometry data, including i) normalization using bead
 | 
					preprocessing of cytometry data, including i) normalization using bead
 | 
				
			||||||
standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
 | 
					standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
 | 
				
			||||||
    (license license:gpl2+)))
 | 
					    (license license:gpl2+)))
 | 
				
			||||||
 | 
					
 | 
				
			||||||
 | 
					(define-public r-kegggraph
 | 
				
			||||||
 | 
					  (package
 | 
				
			||||||
 | 
					    (name "r-kegggraph")
 | 
				
			||||||
 | 
					    (version "1.50.0")
 | 
				
			||||||
 | 
					    (source
 | 
				
			||||||
 | 
					     (origin
 | 
				
			||||||
 | 
					       (method url-fetch)
 | 
				
			||||||
 | 
					       (uri (bioconductor-uri "KEGGgraph" version))
 | 
				
			||||||
 | 
					       (sha256
 | 
				
			||||||
 | 
					        (base32 "1h293hn02ysm923bh9gxk87xv663xiqchqcvpaxpla9c3yrgkx2v"))))
 | 
				
			||||||
 | 
					    (properties `((upstream-name . "KEGGgraph")))
 | 
				
			||||||
 | 
					    (build-system r-build-system)
 | 
				
			||||||
 | 
					    (propagated-inputs
 | 
				
			||||||
 | 
					     `(("r-graph" ,r-graph)
 | 
				
			||||||
 | 
					       ("r-rcurl" ,r-rcurl)
 | 
				
			||||||
 | 
					       ("r-xml" ,r-xml)))
 | 
				
			||||||
 | 
					    (home-page "https://bioconductor.org/packages/KEGGgraph")
 | 
				
			||||||
 | 
					    (synopsis "Graph approach to Kegg Pathway database in R and Bioconductor")
 | 
				
			||||||
 | 
					    (description
 | 
				
			||||||
 | 
					     "@code{r-kegggraph} is an interface between Kegg Pathway database and graph
 | 
				
			||||||
 | 
					object as well as a collection of tools to analyze, dissect and visualize these
 | 
				
			||||||
 | 
					graphs.  It parses the regularly updated kgml (Kegg XML) files into graph models
 | 
				
			||||||
 | 
					maintaining all essential pathway attributes.  The package offers
 | 
				
			||||||
 | 
					functionalities including parsing, graph operation, visualization and etc.")
 | 
				
			||||||
 | 
					    (license license:gpl2+)))
 | 
				
			||||||
| 
						 | 
					
 | 
				
			||||||
		Reference in a new issue