gnu: Add r-isoformswitchanalyzer.
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): New variable.
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		|  | @ -1786,6 +1786,59 @@ naming and share the same rich and consistent \"Vector API\" as much as | |||
| possible.") | ||||
|     (license license:artistic2.0))) | ||||
| 
 | ||||
| (define-public r-isoformswitchanalyzer | ||||
|   (package | ||||
|     (name "r-isoformswitchanalyzer") | ||||
|     (version "1.16.0") | ||||
|     (source | ||||
|      (origin | ||||
|        (method url-fetch) | ||||
|        (uri (bioconductor-uri "IsoformSwitchAnalyzeR" version)) | ||||
|        (sha256 | ||||
|         (base32 "14bqf39gw5ab5r9sr3afkig1jbzdvds1bmcvc6bpb45kschx7fwf")))) | ||||
|     (properties `((upstream-name . "IsoformSwitchAnalyzeR"))) | ||||
|     (build-system r-build-system) | ||||
|     (propagated-inputs | ||||
|      `(("r-biobase" ,r-biobase) | ||||
|        ("r-biocgenerics" ,r-biocgenerics) | ||||
|        ("r-biostrings" ,r-biostrings) | ||||
|        ("r-bsgenome" ,r-bsgenome) | ||||
|        ("r-dbi" ,r-dbi) | ||||
|        ("r-dexseq" ,r-dexseq) | ||||
|        ("r-dplyr" ,r-dplyr) | ||||
|        ("r-drimseq" ,r-drimseq) | ||||
|        ("r-edger" ,r-edger) | ||||
|        ("r-futile-logger" ,r-futile-logger) | ||||
|        ("r-genomeinfodb" ,r-genomeinfodb) | ||||
|        ("r-genomicranges" ,r-genomicranges) | ||||
|        ("r-ggplot2" ,r-ggplot2) | ||||
|        ("r-gridextra" ,r-gridextra) | ||||
|        ("r-iranges" ,r-iranges) | ||||
|        ("r-limma" ,r-limma) | ||||
|        ("r-magrittr" ,r-magrittr) | ||||
|        ("r-plyr" ,r-plyr) | ||||
|        ("r-rcolorbrewer" ,r-rcolorbrewer) | ||||
|        ("r-rcurl" ,r-rcurl) | ||||
|        ("r-readr" ,r-readr) | ||||
|        ("r-reshape2" ,r-reshape2) | ||||
|        ("r-rtracklayer" ,r-rtracklayer) | ||||
|        ("r-stringr" ,r-stringr) | ||||
|        ("r-tibble" ,r-tibble) | ||||
|        ("r-tximeta" ,r-tximeta) | ||||
|        ("r-tximport" ,r-tximport) | ||||
|        ("r-venndiagram" ,r-venndiagram) | ||||
|        ("r-xvector" ,r-xvector))) | ||||
|     (native-inputs | ||||
|      `(("r-knitr" ,r-knitr))) | ||||
|     (home-page "https://bioconductor.org/packages/IsoformSwitchAnalyzeR/") | ||||
|     (synopsis "Analyze alternative splicing in RNA-seq data") | ||||
|     (description | ||||
|      "This is a package for the analysis of alternative splicing and isoform | ||||
| switches with predicted functional consequences (e.g. gain/loss of protein | ||||
| domains etc.) from quantification of all types of RNASeq by tools such as | ||||
| Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.") | ||||
|     (license license:gpl2+))) | ||||
| 
 | ||||
| ;; This is a CRAN package, but it depends on r-biobase and r-limma from Bioconductor. | ||||
| (define-public r-absfiltergsea | ||||
|   (package | ||||
|  |  | |||
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