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gnu: r-diversitree: Move to (gnu packages cran).

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* gnu/packages/bioinformatics.scm (r-diversitree): Move from here...
* gnu/packages/cran.scm (r-diversitree): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
zimoun 2020-09-11 20:08:47 +02:00 • committed by Ricardo Wurmus
parent 415aa8a583
commit 77c7394086
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GPG key ID: 197A5888235FACAC
2 changed files with 31 additions and 31 deletions
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31
gnu/packages/bioinformatics.scm
View file

@ -13084,37 +13084,6 @@ analyses in addition to large-scale sequence-level searches.")
(supported-systems '("x86_64-linux")) (supported-systems '("x86_64-linux"))
(license license:bsd-3)))) (license license:bsd-3))))
(define-public r-diversitree
(package
(name "r-diversitree")
(version "0.9-13")
(source
(origin
(method url-fetch)
(uri (cran-uri "diversitree" version))
(sha256
(base32
"00vi4klywi35hd170ksjv3xja3hqqbkcidcnrrlpgv4179k0azix"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
(inputs `(("fftw" ,fftw) ("gsl" ,gsl)))
(propagated-inputs
`(("r-ape" ,r-ape)
("r-desolve" ,r-desolve)
("r-rcpp" ,r-rcpp)
("r-subplex" ,r-subplex)))
(home-page "https://www.zoology.ubc.ca/prog/diversitree")
(synopsis "Comparative 'phylogenetic' analyses of diversification")
(description "This package contains a number of comparative \"phylogenetic\"
methods, mostly focusing on analysing diversification and character evolution.
Contains implementations of \"BiSSE\" (Binary State Speciation and Extinction)
and its unresolved tree extensions, \"MuSSE\" (Multiple State Speciation and
Extinction), \"QuaSSE\", \"GeoSSE\", and \"BiSSE-ness\" Other included methods
include Markov models of discrete and continuous trait evolution and constant
rate speciation and extinction.")
(license license:gpl2+)))
(define-public sjcount (define-public sjcount
;; There is no tag for version 3.2, nor is there a release archive. ;; There is no tag for version 3.2, nor is there a release archive.
(let ((commit "292d3917cadb3f6834c81e509c30e61cd7ead6e5") (let ((commit "292d3917cadb3f6834c81e509c30e61cd7ead6e5")

31
gnu/packages/cran.scm
View file

@ -24524,3 +24524,34 @@ discovery of differentially expressed genes and markers.")
estimation of phylogenetic trees and networks using Maximum Likelihood, estimation of phylogenetic trees and networks using Maximum Likelihood,
Maximum Parsimony, distance methods and Hadamard conjugation.") Maximum Parsimony, distance methods and Hadamard conjugation.")
(license license:gpl2+))) (license license:gpl2+)))
(define-public r-diversitree
(package
(name "r-diversitree")
(version "0.9-13")
(source
(origin
(method url-fetch)
(uri (cran-uri "diversitree" version))
(sha256
(base32
"00vi4klywi35hd170ksjv3xja3hqqbkcidcnrrlpgv4179k0azix"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
(inputs `(("fftw" ,fftw) ("gsl" ,gsl)))
(propagated-inputs
`(("r-ape" ,r-ape)
("r-desolve" ,r-desolve)
("r-rcpp" ,r-rcpp)
("r-subplex" ,r-subplex)))
(home-page "https://www.zoology.ubc.ca/prog/diversitree")
(synopsis "Comparative 'phylogenetic' analyses of diversification")
(description "This package contains a number of comparative \"phylogenetic\"
methods, mostly focusing on analysing diversification and character evolution.
Contains implementations of \"BiSSE\" (Binary State Speciation and Extinction)
and its unresolved tree extensions, \"MuSSE\" (Multiple State Speciation and
Extinction), \"QuaSSE\", \"GeoSSE\", and \"BiSSE-ness\" Other included methods
include Markov models of discrete and continuous trait evolution and constant
rate speciation and extinction.")
(license license:gpl2+)))