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@ -33,6 +33,7 @@
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#:use-module (gnu packages dejagnu)
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#:use-module (gnu packages dejagnu)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages maths)
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#:use-module (gnu packages maths)
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#:use-module (gnu packages perl)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages python)
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#:use-module (gnu packages python)
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#:use-module (gnu packages statistics)
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#:use-module (gnu packages statistics)
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@ -200,6 +201,36 @@ Markov Models} (HMM) and algorithms: discrete, continous emissions, basic
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training, HMM clustering, HMM mixtures.")
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training, HMM clustering, HMM mixtures.")
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(license license:lgpl2.0+))))
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(license license:lgpl2.0+))))
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(define-public mcl
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(package
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(name "mcl")
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(version "14.137")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"http://micans.org/mcl/src/mcl-"
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(string-replace-substring version "." "-")
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".tar.gz"))
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(sha256
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(base32
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"15xlax3z31lsn62vlg94hkm75nm40q4679amnfg13jm8m2bnhy5m"))))
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(build-system gnu-build-system)
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(arguments
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`(#:configure-flags (list "--enable-blast")))
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(inputs
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`(("perl" ,perl)))
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(home-page "http://micans.org/mcl/")
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(synopsis "Clustering algorithm for graphs")
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(description
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"The MCL algorithm is short for the @dfn{Markov Cluster Algorithm}, a
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fast and scalable unsupervised cluster algorithm for graphs (also known as
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networks) based on simulation of (stochastic) flow in graphs.")
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;; In the LICENCE file and web page it says "The software is licensed
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;; under the GNU General Public License, version 3.", but in several of
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;; the source code files it suggests GPL3 or later.
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;; http://listserver.ebi.ac.uk/pipermail/mcl-users/2016/000376.html
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(license license:gpl3)))
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(define-public randomjungle
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(define-public randomjungle
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(package
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(package
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(name "randomjungle")
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(name "randomjungle")
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