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gnu: Add r-cytoml.

* gnu/packages/bioconductor.scm (r-cytoml): New variable.
master
Ricardo Wurmus 2019-12-15 14:26:31 +01:00
parent 6aedc80514
commit 7a62d5e0c2
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1 changed files with 48 additions and 0 deletions

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@ -40,6 +40,7 @@
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages statistics)
#:use-module (gnu packages web)
#:use-module (gnu packages xml)
#:use-module (srfi srfi-1))
@ -5627,6 +5628,53 @@ package.")
sequential way to mimic the manual gating strategy.")
(license license:artistic2.0)))
(define-public r-cytoml
(package
(name "r-cytoml")
(version "1.12.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "CytoML" version))
(sha256
(base32
"0m8x18wkvis85cawv7j07pk59w76wnzy93ia99gd24j82z4h97p1"))))
(properties `((upstream-name . "CytoML")))
(build-system r-build-system)
(inputs
`(("libxml2" ,libxml2)))
(propagated-inputs
`(("r-base64enc" ,r-base64enc)
("r-bh" ,r-bh)
("r-biobase" ,r-biobase)
("r-corpcor" ,r-corpcor)
("r-cytolib" ,r-cytolib)
("r-data-table" ,r-data-table)
("r-dplyr" ,r-dplyr)
("r-flowcore" ,r-flowcore)
("r-flowworkspace" ,r-flowworkspace)
("r-ggcyto" ,r-ggcyto)
("r-graph" ,r-graph)
("r-jsonlite" ,r-jsonlite)
("r-lattice" ,r-lattice)
("r-ncdfflow" ,r-ncdfflow)
("r-opencyto" ,r-opencyto)
("r-plyr" ,r-plyr)
("r-rbgl" ,r-rbgl)
("r-rcpp" ,r-rcpp)
("r-rcppparallel" ,r-rcppparallel)
("r-rgraphviz" ,r-rgraphviz)
("r-rprotobuflib" ,r-rprotobuflib)
("r-runit" ,r-runit)
("r-xml" ,r-xml)
("r-yaml" ,r-yaml)))
(home-page "https://github.com/RGLab/CytoML")
(synopsis "GatingML interface for cross platform cytometry data sharing")
(description
"This package provides an interface to implementations of the GatingML2.0
standard to exchange gated cytometry data with other software platforms.")
(license license:artistic2.0)))
(define-public r-flowsom
(package
(name "r-flowsom")