Marius Bakke
parent
577367de8b
commit
7ab055434a
|
|
@ -21,10 +21,16 @@
|
||||||
#:use-module (guix packages)
|
#:use-module (guix packages)
|
||||||
#:use-module (guix licenses)
|
#:use-module (guix licenses)
|
||||||
#:use-module (guix download)
|
#:use-module (guix download)
|
||||||
|
#:use-module (guix git-download)
|
||||||
#:use-module (guix build-system gnu)
|
#:use-module (guix build-system gnu)
|
||||||
|
#:use-module (guix gexp)
|
||||||
|
#:use-module (guix utils)
|
||||||
#:use-module (gnu packages)
|
#:use-module (gnu packages)
|
||||||
|
#:use-module (gnu packages base)
|
||||||
|
#:use-module (gnu packages gawk)
|
||||||
#:use-module (gnu packages perl)
|
#:use-module (gnu packages perl)
|
||||||
#:use-module (gnu packages base))
|
#:use-module (gnu packages python)
|
||||||
|
#:use-module (gnu packages python-xyz))
|
||||||
|
|
||||||
(define-public datamash
|
(define-public datamash
|
||||||
(package
|
(package
|
||||||
|
|
@ -48,3 +54,99 @@
|
||||||
"Perform basic numeric, textual and statistical operations on plain text
|
"Perform basic numeric, textual and statistical operations on plain text
|
||||||
files. Designed to work within standard pipelines without additional code.")
|
files. Designed to work within standard pipelines without additional code.")
|
||||||
(license gpl3+)))
|
(license gpl3+)))
|
||||||
|
|
||||||
|
(define-public vnlog
|
||||||
|
(package
|
||||||
|
(name "vnlog")
|
||||||
|
(version "1.32")
|
||||||
|
(home-page "https://github.com/dkogan/vnlog")
|
||||||
|
(source (origin
|
||||||
|
(method git-fetch)
|
||||||
|
(uri (git-reference
|
||||||
|
(url home-page)
|
||||||
|
(commit (string-append "v" version))))
|
||||||
|
(file-name (git-file-name name version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"1g4insm6gkw3c82fq8q9swkdha3cncbz1nib15yg9b2s4yl123hm"))))
|
||||||
|
(build-system gnu-build-system)
|
||||||
|
(native-inputs
|
||||||
|
(list python-numpy)) ;for tests
|
||||||
|
(inputs
|
||||||
|
(list mawk
|
||||||
|
perl
|
||||||
|
perl-ipc-run
|
||||||
|
perl-list-moreutils
|
||||||
|
perl-string-shellquote
|
||||||
|
perl-text-diff
|
||||||
|
perl-text-table
|
||||||
|
python-wrapper))
|
||||||
|
(arguments
|
||||||
|
(list #:make-flags
|
||||||
|
#~(list (string-append "CC=" #$(cc-for-target))
|
||||||
|
(string-append "DESTDIR=" #$output)
|
||||||
|
"USRLIB=lib"
|
||||||
|
"MANDIR=share/man"
|
||||||
|
(string-append "PY3_MODULE_PATH=lib/python"
|
||||||
|
#$(version-major+minor
|
||||||
|
(package-version
|
||||||
|
(this-package-input "python-wrapper")))
|
||||||
|
"/site-packages")
|
||||||
|
;; Do not install the Python 2 modules.
|
||||||
|
"DIST_PY2_MODULES=")
|
||||||
|
#:phases
|
||||||
|
#~(modify-phases %standard-phases
|
||||||
|
(add-after 'unpack 'adjust-Makefile
|
||||||
|
(lambda _
|
||||||
|
(substitute* "GNUmakefile"
|
||||||
|
;; Install Perl modules to the usual location.
|
||||||
|
(("/usr/share/perl5")
|
||||||
|
(string-append "/lib/perl5/site_perl/"
|
||||||
|
#$(package-version
|
||||||
|
(this-package-input "perl"))))
|
||||||
|
;; Do not add a '/usr' suffix to DESTDIR.
|
||||||
|
(("\\$\\(DESTDIR\\)/usr")
|
||||||
|
"$(DESTDIR)")
|
||||||
|
;; Do not strip RUNPATH from the installed C library.
|
||||||
|
((".*find.*chrpath.*")
|
||||||
|
""))))
|
||||||
|
(add-after 'unpack 'use-absolute-mawk
|
||||||
|
(lambda* (#:key inputs #:allow-other-keys)
|
||||||
|
(let ((mawk (search-input-file inputs "bin/mawk")))
|
||||||
|
(substitute* '("vnl-filter" "lib/Vnlog/Util.pm")
|
||||||
|
(("'mawk'")
|
||||||
|
(string-append "'" mawk "'"))))))
|
||||||
|
(delete 'configure)
|
||||||
|
(add-before 'check 'disable-python2-test
|
||||||
|
(lambda _
|
||||||
|
(delete-file "test/test_python2_parser.sh")
|
||||||
|
(substitute* "GNUmakefile"
|
||||||
|
((".*test/test_python2_parser\\.sh\\.RUN.*")
|
||||||
|
""))))
|
||||||
|
(add-after 'install 'wrap
|
||||||
|
(lambda* (#:key inputs outputs #:allow-other-keys)
|
||||||
|
(let* ((out (assoc-ref outputs "out"))
|
||||||
|
(PERL5LIB (string-append
|
||||||
|
out "/lib/perl5/site_perl/"
|
||||||
|
#$(package-version
|
||||||
|
(this-package-input "perl"))
|
||||||
|
":" (getenv "PERL5LIB"))))
|
||||||
|
(for-each (lambda (script)
|
||||||
|
(wrap-program script
|
||||||
|
`("PERL5LIB" ":" prefix (,PERL5LIB))))
|
||||||
|
(find-files (string-append out "/bin"))))))
|
||||||
|
(add-after 'wrap 'check-wrapped-executables
|
||||||
|
(lambda* (#:key outputs #:allow-other-keys)
|
||||||
|
(let ((out (assoc-ref outputs "out")))
|
||||||
|
;; Assert that the installed Perl scripts can find
|
||||||
|
;; their dependencies even when PERL5LIB is unset.
|
||||||
|
(unsetenv "PERL5LIB")
|
||||||
|
(for-each (lambda (script)
|
||||||
|
(invoke/quiet script "--help"))
|
||||||
|
(find-files (string-append out "/bin")
|
||||||
|
"^vnl-[[:lower:]]+$"))))))))
|
||||||
|
(synopsis "Process labelled tabular ASCII data on the command line")
|
||||||
|
(description
|
||||||
|
"Vnlog (pronounced @dfn{vanillog}) is a toolkit for manipulating
|
||||||
|
tabular ASCII data with labelled fields using regular command-line tools.")
|
||||||
|
(license lgpl2.1+)))
|
||||||
|
|
|
||||||
Reference in New Issue