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gnu: Add bamutils.

* gnu/packages/bioinformatics.scm (bamutils): New variable.
master
Roel Janssen 2021-06-01 13:14:38 +02:00
parent b4e3b77270
commit 7ae2b1f2dc
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@ -326,6 +326,37 @@ instance, it implements several methods to assess contig-wise read coverage.")
BAM files.")
(license license:expat)))
(define-public bamutils
(package
(name "bamutils")
(version "1.0.13")
(source (origin
(method url-fetch)
(uri
(string-append
"https://genome.sph.umich.edu/w/images/7/70/"
"BamUtilLibStatGen." version ".tgz"))
(sha256
(base32
"0asr1kmjbr3cyf4hkg865y8c2s30v87xvws4q6c8pyfi6wfd1h8n"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; There are no tests.
#:make-flags `("USER_WARNINGS=-std=gnu++98"
,(string-append "INSTALLDIR="
(assoc-ref %outputs "out") "/bin"))
#:phases
(modify-phases %standard-phases
(delete 'configure))))
(inputs
`(("zlib" ,zlib)))
(home-page "https://genome.sph.umich.edu/wiki/BamUtil")
(synopsis "Programs for working on SAM/BAM files")
(description "This package provides several programs that perform
operations on SAM/BAM files. All of these programs are built into a
single executable called @code{bam}.")
(license license:gpl3+)))
(define-public bcftools
(package
(name "bcftools")