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@ -326,6 +326,37 @@ instance, it implements several methods to assess contig-wise read coverage.")
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BAM files.")
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(license license:expat)))
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(define-public bamutils
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(package
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(name "bamutils")
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(version "1.0.13")
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(source (origin
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(method url-fetch)
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(uri
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(string-append
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"https://genome.sph.umich.edu/w/images/7/70/"
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"BamUtilLibStatGen." version ".tgz"))
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(sha256
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(base32
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"0asr1kmjbr3cyf4hkg865y8c2s30v87xvws4q6c8pyfi6wfd1h8n"))))
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(build-system gnu-build-system)
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(arguments
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`(#:tests? #f ; There are no tests.
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#:make-flags `("USER_WARNINGS=-std=gnu++98"
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,(string-append "INSTALLDIR="
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(assoc-ref %outputs "out") "/bin"))
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#:phases
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(modify-phases %standard-phases
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(delete 'configure))))
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(inputs
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`(("zlib" ,zlib)))
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(home-page "https://genome.sph.umich.edu/wiki/BamUtil")
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(synopsis "Programs for working on SAM/BAM files")
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(description "This package provides several programs that perform
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operations on SAM/BAM files. All of these programs are built into a
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single executable called @code{bam}.")
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(license license:gpl3+)))
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(define-public bcftools
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(package
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(name "bcftools")
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