gnu: Add r-vsn.
* gnu/packages/bioinformatics.scm (r-vsn): New variable.
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		|  | @ -8330,3 +8330,36 @@ CDF file formats.") | |||
|      "This package contains functions for exploratory oligonucleotide array | ||||
| analysis.") | ||||
|     (license license:lgpl2.0+))) | ||||
| 
 | ||||
| (define-public r-vsn | ||||
|   (package | ||||
|     (name "r-vsn") | ||||
|     (version "3.42.3") | ||||
|     (source | ||||
|      (origin | ||||
|        (method url-fetch) | ||||
|        (uri (bioconductor-uri "vsn" version)) | ||||
|        (sha256 | ||||
|         (base32 | ||||
|          "0mgl0azys2g90simf8wx6jdwd7gyg3m4pf12n6w6507jixm2cg97")))) | ||||
|     (build-system r-build-system) | ||||
|     (propagated-inputs | ||||
|      `(("r-affy" ,r-affy) | ||||
|        ("r-biobase" ,r-biobase) | ||||
|        ("r-ggplot2" ,r-ggplot2) | ||||
|        ("r-limma" ,r-limma))) | ||||
|     (home-page "http://bioconductor.org/packages/release/bioc/html/vsn.html") | ||||
|     (synopsis "Variance stabilization and calibration for microarray data") | ||||
|     (description | ||||
|      "The package implements a method for normalising microarray intensities, | ||||
| and works for single- and multiple-color arrays.  It can also be used for data | ||||
| from other technologies, as long as they have similar format.  The method uses | ||||
| a robust variant of the maximum-likelihood estimator for an | ||||
| additive-multiplicative error model and affine calibration.  The model | ||||
| incorporates data calibration step (a.k.a.  normalization), a model for the | ||||
| dependence of the variance on the mean intensity and a variance stabilizing | ||||
| data transformation.  Differences between transformed intensities are | ||||
| analogous to \"normalized log-ratios\".  However, in contrast to the latter, | ||||
| their variance is independent of the mean, and they are usually more sensitive | ||||
| and specific in detecting differential transcription.") | ||||
|     (license license:artistic2.0))) | ||||
|  |  | |||
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