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gnu: r-hitc: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-hitc): Move from here...
* gnu/packages/bioconductor.scm (r-hitc): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
zimoun 2020-09-14 18:07:45 +02:00 • committed by Ricardo Wurmus
parent 63b75c01c2
commit 7df42d3774
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GPG key ID: 197A5888235FACAC
2 changed files with 29 additions and 29 deletions
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29
gnu/packages/bioconductor.scm
View file

@ -8348,6 +8348,35 @@ routines.")
objects from the @code{graph} package.")
(license license:epl1.0)))
(define-public r-hitc
(package
(name "r-hitc")
(version "1.32.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "HiTC" version))
(sha256
(base32
"1jx2pfa7sbdz7xi466lz1h5xv126g56z73n0a5l2wrq28k47qaxy"))))
(properties `((upstream-name . "HiTC")))
(build-system r-build-system)
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rtracklayer" ,r-rtracklayer)))
(home-page "https://bioconductor.org/packages/HiTC")
(synopsis "High throughput chromosome conformation capture analysis")
(description
"The HiTC package was developed to explore high-throughput \"C\" data
such as 5C or Hi-C. Dedicated R classes as well as standard methods for
quality controls, normalization, visualization, and further analysis are also
provided.")
(license license:artistic2.0)))
(define-public r-hdf5array
(package
(name "r-hdf5array")

29
gnu/packages/bioinformatics.scm
View file

@ -10625,35 +10625,6 @@ intra-chromosomal contact maps produced by genome-wide genome architecture
assays such as Hi-C.")
(license license:gpl2+)))
(define-public r-hitc
(package
(name "r-hitc")
(version "1.32.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "HiTC" version))
(sha256
(base32
"1jx2pfa7sbdz7xi466lz1h5xv126g56z73n0a5l2wrq28k47qaxy"))))
(properties `((upstream-name . "HiTC")))
(build-system r-build-system)
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rtracklayer" ,r-rtracklayer)))
(home-page "https://bioconductor.org/packages/HiTC")
(synopsis "High throughput chromosome conformation capture analysis")
(description
"The HiTC package was developed to explore high-throughput \"C\" data
such as 5C or Hi-C. Dedicated R classes as well as standard methods for
quality controls, normalization, visualization, and further analysis are also
provided.")
(license license:artistic2.0)))
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))