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gnu: Add umi-tools.

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* gnu/packages/bioinformatics.scm (umi-tools): New variable.
This commit is contained in:
Ricardo Wurmus 2019-04-26 14:57:29 +02:00
parent 8caa458953
commit 7f55904558
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35
gnu/packages/bioinformatics.scm
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@ -14739,3 +14739,38 @@ tools for identifying genome bins that are likely candidates for merging based
on marker set compatibility, similarity in genomic characteristics, and
proximity within a reference genome.")
(license license:gpl3+)))
(define-public umi-tools
(package
(name "umi-tools")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "umi_tools" version))
(sha256
(base32
"08y3vz1vcx09whmbsn722lcs6jl9wyrh9i4p3k8j4cb1i32bij4a"))))
(build-system python-build-system)
(inputs
`(("python-setuptools" ,python-setuptools)
("python-pandas" ,python-pandas)
("python-future" ,python-future)
("python-scipy" ,python-scipy)
("python-matplotlib" ,python-matplotlib)
("python-regex" ,python-regex)
("python-pysam" ,python-pysam)))
(native-inputs
`(("python-setuptools" ,python-setuptools)
("python-cython" ,python-cython)))
(home-page "https://github.com/CGATOxford/UMI-tools")
(synopsis "Tools for analyzing unique modular identifiers")
(description "This package provides tools for dealing with @dfn{Unique
Molecular Identifiers} (UMIs) and @dfn{Random Molecular Tags} (RMTs) in
genetic sequences. There are six tools: the @code{extract} and
@code{whitelist} commands are used to prepare a fastq containg UMIs @code{+/-}
cell barcodes for alignment. The remaining commands, @code{group},
@code{dedup}, and @{count}/@code{count_tab}, are used to identify PCR
duplicates using the UMIs and perform different levels of analysis depending
on the needs of the user.")
(license license:expat)))

2
gnu/packages/music.scm
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@ -54,6 +54,7 @@
#:use-module (guix build-system trivial)
#:use-module (guix build-system go)
#:use-module (gnu packages)
#:use-module (gnu packages admin)
#:use-module (gnu packages algebra)
#:use-module (gnu packages apr)
#:use-module (gnu packages audio)
@ -94,6 +95,7 @@
#:use-module (gnu packages gstreamer)
#:use-module (gnu packages gtk)
#:use-module (gnu packages guile)
#:use-module (gnu packages haskell)
#:use-module (gnu packages image)
#:use-module (gnu packages imagemagick)
#:use-module (gnu packages java)