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gnu: r-organismdbi: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-organismdbi): Move from here...
* gnu/packages/bioconductor.scm (r-organismdbi): ...to here.
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zimoun 2021-05-21 22:26:00 +02:00 • committed by Ricardo Wurmus
parent d1ea2b7c8b
commit 8182e6a6fd
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2 changed files with 32 additions and 32 deletions
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32
gnu/packages/bioconductor.scm
View file

@ -3145,6 +3145,38 @@ mzIdentML files with the drawback of having less pretty output than a vendor
specific parser.")
(license license:gpl2+)))
(define-public r-organismdbi
(package
(name "r-organismdbi")
(version "1.32.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "OrganismDbi" version))
(sha256
(base32
"1mklnzs0d0ygcdibwfnk5xqr8ln6wpa00qcaw9c68m342kql0jqw"))))
(properties `((upstream-name . "OrganismDbi")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocmanager" ,r-biocmanager)
("r-dbi" ,r-dbi)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-graph" ,r-graph)
("r-iranges" ,r-iranges)
("r-rbgl" ,r-rbgl)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://bioconductor.org/packages/OrganismDbi")
(synopsis "Software to enable the smooth interfacing of database packages")
(description "The package enables a simple unified interface to several
annotation packages each of which has its own schema by taking advantage of
the fact that each of these packages implements a select methods.")
(license license:artistic2.0)))
(define-public r-pcamethods
(package
(name "r-pcamethods")

32
gnu/packages/bioinformatics.scm
View file

@ -9213,38 +9213,6 @@ chromosome region or transcript models of lincRNA genes.")
;; No version specified
(license license:lgpl3+)))
(define-public r-organismdbi
(package
(name "r-organismdbi")
(version "1.32.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "OrganismDbi" version))
(sha256
(base32
"1mklnzs0d0ygcdibwfnk5xqr8ln6wpa00qcaw9c68m342kql0jqw"))))
(properties `((upstream-name . "OrganismDbi")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocmanager" ,r-biocmanager)
("r-dbi" ,r-dbi)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-graph" ,r-graph)
("r-iranges" ,r-iranges)
("r-rbgl" ,r-rbgl)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://bioconductor.org/packages/OrganismDbi")
(synopsis "Software to enable the smooth interfacing of database packages")
(description "The package enables a simple unified interface to several
annotation packages each of which has its own schema by taking advantage of
the fact that each of these packages implements a select methods.")
(license license:artistic2.0)))
(define-public r-biovizbase
(package
(name "r-biovizbase")